Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09570 - ( PHYA (PHYTOCHROME A) G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer )
21 Proteins interacs with AT1G09570| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G18790
   | ExperimentalPhenotypic EnhancementPhenotypic EnhancementPhenotypic Suppressionsynthetic growth defect | FSW = 0.4949
| Class A:nucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
| AT4G08920
| Experimentalinteraction detection methodtwo hybrid | FSW = 0.1440
| Class A:nucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE |
| AT2G37680
| Experimentaltwo hybridtwo hybridtwo hybridReconstituted ComplexAffinity Capture-Westernin vitroaffinity technology | FSW = 0.0683
| Class A:nucleuscytosol | CONTAINS INTERPRO DOMAIN/S VACUOLAR IMPORT AND DEGRADATION PROTEIN VID24 (INTERPROIPR018618) HAS 214 BLAST HITS TO 214 PROTEINS IN 84 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 57 FUNGI - 124 PLANTS - 31 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
| AT2G32950
| ExperimentalReconstituted ComplexbiochemicalAffinity Capture-Westernin vitroaffinity technology | FSW = 0.0952
| Class A:nucleuscytosol | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G63310
| ExperimentalAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-Westernin vitrotwo hybridin vitro | FSW = 0.0465
| Class A:nucleusClass B:unclearplastidcytosolClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
| AT1G14920
| ExperimentalPhenotypic Suppression | FSW = 0.1440
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | GAI (GIBBERELLIC ACID INSENSITIVE) TRANSCRIPTION FACTOR |
| AT1G09530
| Experimentaltwo hybridtwo hybridin vitrotwo hybridin vitroin vitroReconstituted ComplexReconstituted ComplexReconstituted Complexinteraction detection methodpull downtwo hybridAffinity Capture-Western | FSW = 0.2844
| Class A:nucleusClass B:cytosol | PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT1G02340
| Experimental | FSW = 0.3072
| Class A:nucleusClass B:cytosol | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT2G20180
| ExperimentalReconstituted Complexin vitro | FSW = 0.0775
| Class A:nucleusClass B:cytosol | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) DNA BINDING / PHYTOCHROME BINDING / TRANSCRIPTION FACTOR |
| AT2G02950
| Experimentaltwo hybridpull downPhenotypic SuppressionReconstituted Complexin vitro | FSW = 0.0775
| Class A:cytosolClass B:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) PROTEIN BINDING |
| AT3G19980
| Experimentalin vitro | FSW = 0.0092
| Class B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G02810
| ExperimentalPhenotypic Enhancement | FSW = 0.1254
| Class B:nucleusmitochondrioncytosol | PRR7 (PSEUDO-RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT2G42810
| Experimentaltwo hybrid | FSW = 0.0655
| Class D:cytosol (p = 0.67) | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G25930
| ExperimentalPhenotypic Suppression | FSW = 0.1448
| Unknown | ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR |
| AT2G43010
| ExperimentalReconstituted Complexin vitro | FSW = 0.2571
| Unknown | PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT3G22170
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0334
| Unknown | FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT2G45190
| Experimentalpull down | FSW = 0.0381
| Unknown | AFO (ABNORMAL FLORAL ORGANS) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT5G02200
| Experimentaltwo hybridtwo hybridpull downReconstituted Complexin vitro | FSW = 0.1177
| Unknown | FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) PROTEIN BINDING |
| AT2G37678
| Experimentaltwo hybridpull down | FSW = 0.0664
| Unknown | FHY1 (FAR-RED ELONGATED HYPOCOTYL 1) TRANSCRIPTION REGULATOR |
| AT3G56150
| Experimental | FSW = 0.0139
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
| AT3G59060
| Experimentalbiochemicalin vitro | FSW = 0.3429
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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