Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09770 - ( ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA binding / transcription factor )
72 Proteins interacs with AT1G09770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimentalcoimmunoprecipitation | FSW = 0.2324
| Class A:nucleusClass B:unclearplastidClass D:nucleus (p = 0.78) | MOS4 (MODIFIER OF SNC14) |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4281
| Class C:plastidnucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3392
| Class C:plastidnucleus | SPLICING FACTOR PUTATIVE |
AT1G04820 | PredictedSynthetic Rescue | FSW = 0.0109
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G38770 | PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MSAffinity Capture-Western | FSW = 0.0131
| Class C:plastid | EMB2765 (EMBRYO DEFECTIVE 2765) |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4502
| Class C:plastid | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2568
| Class C:plastid | SPLICING FACTOR PUTATIVE |
AT3G57610 | Predictedtwo hybridtwo hybrid | FSW = 0.0292
| Class C:plastid | ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE |
AT2G33340 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationAffinity Capture-Westernfar western blottinginteraction prediction | FSW = 0.2908
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18790 | Predictedtwo hybridReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1826
| Class C:plastid | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G47250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1087
| Class C:plastid | RNA HELICASE PUTATIVE |
AT4G14960 | PredictedSynthetic Rescueinterologs mapping | FSW = 0.0128
| Class C:nucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G07590 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2967
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3027
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4643
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0928
| Class C:nucleus | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2009
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3610
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.4050
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT1G76300 | PredictedAffinity Capture-MS | FSW = 0.0138
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G11500 | PredictedAffinity Capture-MS | FSW = 0.3096
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.0064
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3880
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G77180 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0277
| Class C:nucleus | CHROMATIN PROTEIN FAMILY |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0356
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1070
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT1G04510 | Predictedtwo hybridCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationfar western blottingtwo hybrid | FSW = 0.3350
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G20010 | Predictedin vitroin vivotwo hybridCo-expression | FSW = 0.0135
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT4G30330 | PredictedAffinity Capture-MS | FSW = 0.2688
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT2G18740 | PredictedAffinity Capture-MS | FSW = 0.2676
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G65700 | PredictedAffinity Capture-Western | FSW = 0.0329
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G62810 | Predictedtwo hybrid | FSW = 0.0144
| Unknown | PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G06220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1289
| Unknown | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G26560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2134
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT4G00900 | Predictedtwo hybrid | FSW = 0.0237
| Unknown | ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE |
AT4G14150 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1) MICROTUBULE MOTOR/ PLUS-END-DIRECTED MICROTUBULE MOTOR |
AT3G25840 | PredictedCo-purification | FSW = 0.0694
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G15900 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-Westernin vitroin vivointeraction predictionCo-expression | FSW = 0.2786
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G37560 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G69960 | Predictedin vitroin vivotwo hybrid | FSW = 0.0107
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G41770 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3824
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G17070 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3555
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2007
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G80930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2841
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3645
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G21110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2764
| Unknown | G10 FAMILY PROTEIN |
AT5G28740 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3705
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT1G10580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2225
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G14640 | PredictedAffinity Capture-MS | FSW = 0.3340
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G65660 | PredictedAffinity Capture-MS | FSW = 0.1405
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT2G32600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2721
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4022
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G06160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3824
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G14650 | PredictedAffinity Capture-MS | FSW = 0.0685
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN |
AT1G56290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0129
| Unknown | CWFJ-LIKE FAMILY PROTEIN |
AT2G29580 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0127
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G43770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1175
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G13200 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | EMB2769 (EMBRYO DEFECTIVE 2769) |
AT3G45950 | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | SPLICING FACTOR-RELATED |
AT4G03430 | PredictedCo-purification | FSW = 0.2758
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G33060 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT4G36690 | PredictedCo-purification | FSW = 0.0169
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G47790 | PredictedAffinity Capture-MSin vitroin vivotwo hybridCo-expression | FSW = 0.0338
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
AT5G46280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0088
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G12620 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT2G07690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0273
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3027
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT3G13210 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1891
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454