Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09770 - ( ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA binding / transcription factor )

72 Proteins interacs with AT1G09770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G18165

Experimental

coimmunoprecipitation

FSW = 0.2324

Class A:

nucleus

Class B:

unclear

plastid

Class D:

nucleus (p = 0.78)

MOS4 (MODIFIER OF SNC14)
AT1G09760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4281

Class C:

plastid

nucleus

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT5G64270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3392

Class C:

plastid

nucleus

SPLICING FACTOR PUTATIVE
AT1G04820Predicted

Synthetic Rescue

FSW = 0.0109

Class C:

plastid

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G38770

Predicted

Affinity Capture-MS

synthetic growth defect

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0131

Class C:

plastid

EMB2765 (EMBRYO DEFECTIVE 2765)
AT1G80070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4502

Class C:

plastid

SUS2 (ABNORMAL SUSPENSOR 2)
AT3G55200Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2568

Class C:

plastid

SPLICING FACTOR PUTATIVE
AT3G57610

Predicted

two hybrid

two hybrid

FSW = 0.0292

Class C:

plastid

ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE
AT2G33340

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-purification

Affinity Capture-Western

far western blotting

interaction prediction

FSW = 0.2908

Class C:

plastid

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G18790

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.1826

Class C:

plastid

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT2G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1087

Class C:

plastid

RNA HELICASE PUTATIVE
AT4G14960

Predicted

Synthetic Rescue

interologs mapping

FSW = 0.0128

Class C:

nucleus

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G07590

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2967

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3027

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4643

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G30260

Predicted

Affinity Capture-MS

FSW = 0.0928

Class C:

nucleus

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G47640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2009

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G30220

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3610

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT2G23930

Predicted

Affinity Capture-MS

FSW = 0.4050

Class C:

nucleus

SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT1G76300

Predicted

Affinity Capture-MS

FSW = 0.0138

Class C:

nucleus

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G11500

Predicted

Affinity Capture-MS

FSW = 0.3096

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.0064

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT1G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3880

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G77180

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0277

Class C:

nucleus

CHROMATIN PROTEIN FAMILY
AT1G06960

Predicted

Affinity Capture-MS

FSW = 0.0356

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1070

Class C:

nucleus

RNA HELICASE PUTATIVE
AT1G04510

Predicted

two hybrid

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

far western blotting

two hybrid

FSW = 0.3350

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20010

Predicted

in vitro

in vivo

two hybrid

Co-expression

FSW = 0.0135

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G30330

Predicted

Affinity Capture-MS

FSW = 0.2688

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G18740

Predicted

Affinity Capture-MS

FSW = 0.2676

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G65700

Predicted

Affinity Capture-Western

FSW = 0.0329

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G62810

Predicted

two hybrid

FSW = 0.0144

Unknown

PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G06220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1289

Unknown

MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G26560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2134

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT4G00900

Predicted

two hybrid

FSW = 0.0237

Unknown

ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE
AT4G14150

Predicted

two hybrid

FSW = 0.0132

Unknown

PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1) MICROTUBULE MOTOR/ PLUS-END-DIRECTED MICROTUBULE MOTOR
AT3G25840

Predicted

Co-purification

FSW = 0.0694

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G15900

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

Affinity Capture-Western

in vitro

in vivo

interaction prediction

Co-expression

FSW = 0.2786

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G37560

Predicted

Affinity Capture-MS

FSW = 0.0421

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT1G69960

Predicted

in vitro

in vivo

two hybrid

FSW = 0.0107

Unknown

PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G41770

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.3824

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G17070

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3555

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G17130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2007

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G80930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2841

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT3G24090

Predicted

Affinity Capture-MS

FSW = 0.0034

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G55220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3645

Unknown

SPLICING FACTOR PUTATIVE
AT4G21110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2764

Unknown

G10 FAMILY PROTEIN
AT5G28740

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.3705

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT1G10580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2225

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G14640

Predicted

Affinity Capture-MS

FSW = 0.3340

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0671

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G65660

Predicted

Affinity Capture-MS

FSW = 0.1405

Unknown

SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT2G32600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2721

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G47120

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G21660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4022

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G06160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3824

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G14650

Predicted

Affinity Capture-MS

FSW = 0.0685

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN
AT1G56290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0129

Unknown

CWFJ-LIKE FAMILY PROTEIN
AT2G29580

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0127

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G43770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1175

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13200

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

EMB2769 (EMBRYO DEFECTIVE 2769)
AT3G45950

Predicted

Affinity Capture-MS

FSW = 0.0292

Unknown

SPLICING FACTOR-RELATED
AT4G03430

Predicted

Co-purification

FSW = 0.2758

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G33060

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G36690

Predicted

Co-purification

FSW = 0.0169

Unknown

ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G47790

Predicted

Affinity Capture-MS

in vitro

in vivo

two hybrid

Co-expression

FSW = 0.0338

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT5G46280

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0088

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT4G12620

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT2G07690

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0273

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT3G16650

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3027

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT3G13210

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1891

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0660

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454