Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09810 - ( ECT11 (evolutionarily conserved C-terminal region 11) )
14 Proteins interacs with AT1G09810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT1G77750 | PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT4G14350 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.2105
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0493
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G13900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0488
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT3G03950 | PredictedGene fusion methodCo-expression | FSW = 0.0362
| Unknown | PROTEIN BINDING |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.2284
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G66590 | PredictedSynthetic LethalitySynthetic Lethalitytwo hybridPhenotypic Enhancement | FSW = 0.1125
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0482
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0781
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
AT4G10130 | PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1805
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G29580 | PredictedPhenotypic Suppression | FSW = 0.1330
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454