Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10030 - ( ERG28 (Arabidopsis homolog of yeast ergosterol28) )

10 Proteins interacs with AT1G10030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30710

Predicted

Synthetic Lethality

FSW = 0.0856

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G13710

Predicted

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0330

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT2G06530

Predicted

two hybrid

interaction prediction

FSW = 0.0492

Unknown

VPS21
AT1G07420

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

interaction prediction

FSW = 0.1496

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G11680

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1266

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G02580

Predicted

Affinity Capture-Western

FSW = 0.1453

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT1G66960

Predicted

Affinity Capture-Western

FSW = 0.1224

Unknown

LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE
AT1G58440

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.2032

Unknown

XF1 SQUALENE MONOOXYGENASE
AT1G47290

Predicted

two hybrid

Co-expression

FSW = 0.1170

Unknown

AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT5G52210

Predicted

interaction prediction

FSW = 0.0260

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454