Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10060 - ( branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) )

65 Proteins interacs with AT1G10060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G20000

Predicted

Affinity Capture-MS

FSW = 0.0201

Class C:

mitochondrion

TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT2G33210

Predicted

Affinity Capture-MS

FSW = 0.0013

Class C:

mitochondrion

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G45770

Predicted

Synthetic Lethality

FSW = 0.3396

Class C:

mitochondrion

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT5G65780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2274

Class C:

mitochondrion

ATBCAT-5 BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G70190

Predicted

two hybrid

FSW = 0.1048

Class C:

mitochondrion

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT4G36130

Predicted

Phenotypic Enhancement

FSW = 0.0218

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT4G36750

Predicted

two hybrid

FSW = 0.1764

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0047

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G07100

Predicted

two hybrid

FSW = 0.0930

Unknown

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G61520

Predicted

two hybrid

FSW = 0.0147

Unknown

HEXOSE TRANSPORTER PUTATIVE
AT3G49680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1492

Unknown

BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G48560

Predicted

Phenotypic Enhancement

FSW = 0.0326

Unknown

CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) ACETOLACTATE SYNTHASE/ PYRUVATE DECARBOXYLASE
AT5G23310

Predicted

two hybrid

FSW = 0.0144

Unknown

FSD3 (FE SUPEROXIDE DISMUTASE 3) SUPEROXIDE DISMUTASE
AT1G10070

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0245

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G05560

Predicted

two hybrid

FSW = 0.0199

Unknown

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.0282

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G39180

Predicted

two hybrid

FSW = 0.0782

Unknown

SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER
AT2G38290

Predicted

two hybrid

FSW = 0.0138

Unknown

ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT5G26340

Predicted

two hybrid

FSW = 0.0399

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12110

Predicted

two hybrid

FSW = 0.0130

Unknown

NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT5G19990

Predicted

Affinity Capture-MS

FSW = 0.0046

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT3G23310

Predicted

two hybrid

FSW = 0.0107

Unknown

PROTEIN KINASE PUTATIVE
AT2G44860

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT1G76300

Predicted

two hybrid

FSW = 0.0537

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G72830

Predicted

two hybrid

FSW = 0.0139

Unknown

NF-YA3 (NUCLEAR FACTOR Y SUBUNIT A3) TRANSCRIPTION FACTOR
AT1G21190

Predicted

two hybrid

FSW = 0.0351

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G43840

Predicted

two hybrid

FSW = 0.0704

Unknown

AT-HSFA6A DNA BINDING / TRANSCRIPTION FACTOR
AT1G28490

Predicted

two hybrid

FSW = 0.0057

Unknown

SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G54840

Predicted

two hybrid

FSW = 0.0153

Unknown

ARA6 GTP BINDING / GTPASE
AT3G19710

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1918

Unknown

BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) CATALYTIC/ METHIONINE-OXO-ACID TRANSAMINASE
AT1G50110

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0746

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6)
AT4G15900

Predicted

two hybrid

FSW = 0.1007

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G29230

Predicted

two hybrid

FSW = 0.1905

Unknown

CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G49400

Predicted

two hybrid

FSW = 0.0325

Unknown

EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G55810

Predicted

two hybrid

FSW = 0.0193

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G59580

Predicted

two hybrid

FSW = 0.0057

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT1G66950

Predicted

two hybrid

FSW = 0.0741

Unknown

PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G68390

Predicted

two hybrid

FSW = 0.0800

Unknown

UNKNOWN PROTEIN
AT1G71530

Predicted

two hybrid

FSW = 0.1852

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G19160

Predicted

two hybrid

FSW = 0.0612

Unknown

UNKNOWN PROTEIN
AT2G32765

Predicted

Phenotypic Enhancement

FSW = 0.0269

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G46650

Predicted

two hybrid

FSW = 0.2222

Unknown

CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT2G47870

Predicted

two hybrid

FSW = 0.0201

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G01090

Predicted

two hybrid

FSW = 0.0077

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G05040

Predicted

two hybrid

FSW = 0.0870

Unknown

HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER
AT3G18860

Predicted

two hybrid

FSW = 0.0104

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G19670Predicted

two hybrid

FSW = 0.0306

Unknown

PROTEIN BINDING
AT3G44190

Predicted

two hybrid

FSW = 0.0118

Unknown

PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN
AT3G51110

Predicted

two hybrid

FSW = 0.0152

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G61210

Predicted

two hybrid

FSW = 0.1200

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G23920

Predicted

two hybrid

FSW = 0.0112

Unknown

UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT4G24710

Predicted

two hybrid

FSW = 0.0254

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G30820

Predicted

two hybrid

FSW = 0.1234

Unknown

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED
AT5G05070

Predicted

two hybrid

FSW = 0.0261

Unknown

ZINC ION BINDING
AT5G06360

Predicted

two hybrid

FSW = 0.0199

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14050

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G19090

Predicted

two hybrid

FSW = 0.1337

Unknown

HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN
AT5G38110

Predicted

two hybrid

FSW = 0.1358

Unknown

ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G38290

Predicted

two hybrid

FSW = 0.2924

Unknown

PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT5G40040

Predicted

Phenotypic Enhancement

FSW = 0.0157

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E)
AT5G61220

Predicted

two hybrid

FSW = 0.0290

Unknown

COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.0244

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT1G50090

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1730

Unknown

AMINOTRANSFERASE CLASS IV FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454