Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10090 - ( unknown protein )
73 Proteins interacs with AT1G10090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G02500 | PredictedPhenotypic Enhancement | FSW = 0.0097
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT5G09590 | Predictedsynthetic growth defect | FSW = 0.0876
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | Predictedsynthetic growth defect | FSW = 0.1053
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G22110 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0629
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G28390 | PredictedSynthetic Lethality | FSW = 0.0146
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT5G13450 | PredictedSynthetic Lethality | FSW = 0.1079
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT4G29210 | Predictedsynthetic growth defect | FSW = 0.0429
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT3G22890 | Predictedsynthetic growth defect | FSW = 0.0843
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G79720 | PredictedSynthetic Rescue | FSW = 0.0703
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT4G25910 | Predictedsynthetic growth defect | FSW = 0.0436
| Unknown | NFU3 STRUCTURAL MOLECULE |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0078
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT2G43030 | Predictedsynthetic growth defect | FSW = 0.0247
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT3G54670 | Predictedsynthetic growth defect | FSW = 0.0080
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G60540 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1362
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT2G33370 | Predictedsynthetic growth defect | FSW = 0.0094
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G04750 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityPhenotypic Enhancementinterologs mapping | FSW = 0.1538
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G07180 | PredictedAffinity Capture-Westerninterologs mappingtwo hybrid | FSW = 0.0550
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G59950 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0651
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G44680 | PredictedSynthetic Lethality | FSW = 0.0191
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.0429
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G30160 | PredictedSynthetic Lethality | FSW = 0.1008
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G66590 | PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G07140 | PredictedSynthetic Lethality | FSW = 0.1111
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT1G57550 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT2G05170 | PredictedPhenotypic EnhancementSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.0620
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39200 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1253
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G27070 | PredictedSynthetic Rescue | FSW = 0.0850
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT2G30910 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT5G49060 | PredictedPhenotypic SuppressionPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingSynthetic LethalityAffinity Capture-MSSynthetic Lethalitytwo hybridinterologs mappingPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0807
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G30800 | Predictedsynthetic growth defect | FSW = 0.0077
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1565
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G30580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0111
| Unknown | GTP BINDING |
AT2G20280 | PredictedPhenotypic Enhancement | FSW = 0.0156
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT3G05960 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0223
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G61740 | PredictedSynthetic Rescue | FSW = 0.0277
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G25500 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G26690 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1021
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G66240 | Predictedinterologs mapping | FSW = 0.0650
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G68020 | PredictedSynthetic Lethality | FSW = 0.1650
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.0918
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G30800 | PredictedSynthetic Lethality | FSW = 0.0908
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G37420 | PredictedSynthetic Lethality | FSW = 0.1109
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G03080 | Predictedsynthetic growth defect | FSW = 0.0726
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G06470 | Predictedsynthetic growth defect | FSW = 0.0365
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1938
| Unknown | UNKNOWN PROTEIN |
AT4G12620 | Predictedsynthetic growth defect | FSW = 0.0208
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.1225
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25540 | Predictedsynthetic growth defect | FSW = 0.0161
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G27130 | Predictedsynthetic growth defect | FSW = 0.1318
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G36050 | Predictedsynthetic growth defect | FSW = 0.0640
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38290 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR (TAIRAT4G376801) HAS 882 BLAST HITS TO 882 PROTEINS IN 140 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 535 FUNGI - 175 PLANTS - 99 VIRUSES - 0 OTHER EUKARYOTES - 65 (SOURCE NCBI BLINK) |
AT5G03850 | Predictedsynthetic growth defect | FSW = 0.0135
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28B) |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.1041
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.1339
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17330 | PredictedPhenotypic Enhancement | FSW = 0.0275
| Unknown | GAD CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE |
AT5G41700 | PredictedSynthetic Lethality | FSW = 0.0269
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45620 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1729
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G66630 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT5G35980 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G04620 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | CATION EFFLUX FAMILY PROTEIN |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G16570 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G01580 | Predictedtwo hybrid | FSW = 0.0421
| Unknown | FRO2 (FERRIC REDUCTION OXIDASE 2) FERRIC-CHELATE REDUCTASE |
AT1G21160 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454