Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10130 - ( ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) calcium-transporting ATPase/ calmodulin binding / manganese-transporting ATPase/ peroxidase )
89 Proteins interacs with AT1G10130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G19640 | Predictedinterologs mapping | FSW = 0.0594
| Class C:endosomeendoplasmic reticulum | ARA7 GTP BINDING |
AT5G66680 | Predictedinterologs mapping | FSW = 0.1453
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G11560 | Predictedinterologs mapping | FSW = 0.0108
| Class C:endoplasmic reticulum | CATALYTIC |
AT1G07810 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0870
| Class C:endoplasmic reticulum | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT3G07180 | Predictedinterologs mapping | FSW = 0.0296
| Class C:endoplasmic reticulum | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT4G01320 | Predictedinterologs mapping | FSW = 0.0494
| Class C:endoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G27770 | PredictedSynthetic LethalityEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1613
| Class C:endoplasmic reticulum | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT5G63840 | Predictedinterologs mapping | FSW = 0.0522
| Class C:endoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G23630 | PredictedPhenotypic Enhancementinterologs mappingPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.1643
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G37640 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1129
| Class C:endoplasmic reticulum | ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G11890 | Predictedinterologs mapping | FSW = 0.0720
| Class C:endoplasmic reticulum | SEC22 TRANSPORTER |
AT4G00900 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1259
| Class C:endoplasmic reticulum | ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE |
AT2G39630 | Predictedinterologs mapping | FSW = 0.0568
| Class C:endoplasmic reticulum | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G05710 | Predictedinterologs mapping | FSW = 0.1028
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G08580 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT1G03860 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | ATPHB2 (PROHIBITIN 2) |
AT3G27170 | Predictedinterologs mapping | FSW = 0.0592
| Unknown | CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT3G27280 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | ATPHB4 (PROHIBITIN 4) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.0018
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT2G41560 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1364
| Unknown | ACA4 (AUTO-INHIBITED CA(2+)-ATPASE ISOFORM 4) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G57330 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1423
| Unknown | ACA11 (AUTOINHIBITED CA2+-ATPASE 11) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G10630 | Predictedinterologs mappingGene neighbors methodCo-expression | FSW = 0.0395
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G31780 | Predictedinterologs mapping | FSW = 0.1035
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mapping | FSW = 0.1366
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT1G22740 | Predictedinterologs mapping | FSW = 0.0333
| Unknown | RABG3B GTP BINDING |
AT5G13710 | Predictedinterologs mapping | FSW = 0.0246
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT2G30710 | Predictedinterologs mapping | FSW = 0.1523
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT5G16630 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | RAD4 DAMAGED DNA BINDING |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | DNA HELICASE-RELATED |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0254
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0058
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G13210 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.1094
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G12640 | Predictedinterologs mapping | FSW = 0.0110
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G09930 | Predictedinterologs mapping | FSW = 0.0298
| Unknown | ATOPT2 OLIGOPEPTIDE TRANSPORTER |
AT1G08820 | Predictedinterologs mapping | FSW = 0.0292
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0475
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G59370 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G35940 | PredictedSynthetic Lethality | FSW = 0.1111
| Unknown | ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G10920 | PredictedSynthetic Rescue | FSW = 0.0099
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G18480 | Predictedinterologs mapping | FSW = 0.0050
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT1G04260 | Predictedinterologs mapping | FSW = 0.0871
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT1G71270 | Predictedinterologs mapping | FSW = 0.0474
| Unknown | POK (POKY POLLEN TUBE) |
AT3G63380 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1488
| Unknown | CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA(2+)-ATPASE PUTATIVE (ACA12) |
AT2G22950 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1488
| Unknown | CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA2+-ATPASE PUTATIVE (ACA7) |
AT5G38460 | Predictedinterologs mapping | FSW = 0.1261
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G44660 | Predictedinterologs mapping | FSW = 0.0976
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.0421
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT1G48160 | Predictedinterologs mapping | FSW = 0.0062
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT1G08830 | PredictedSynthetic RescuePhenotypic EnhancementSynthetic Rescue | FSW = 0.0998
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.0313
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.0452
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G36200 | PredictedSynthetic Lethality | FSW = 0.0273
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G08065 | Predictedtwo hybrid | FSW = 0.0430
| Unknown | ACA5 (ALPHA CARBONIC ANHYDRASE 5) CARBONATE DEHYDRATASE/ ZINC ION BINDING |
AT1G19310 | Predictedtwo hybridtwo hybrid | FSW = 0.0109
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G04180 | Predictedtwo hybrid | FSW = 0.0228
| Unknown | ACA3 (ALPHA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE/ ZINC ION BINDING |
AT5G12210 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0031
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT1G53710 | Predictedinterologs mapping | FSW = 0.0329
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G16330 | Predictedinterologs mapping | FSW = 0.0143
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G01770 | Predictedinterologs mapping | FSW = 0.0065
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G28390 | Predictedinterologs mapping | FSW = 0.0301
| Unknown | SAND FAMILY PROTEIN |
AT5G27970 | Predictedinterologs mapping | FSW = 0.1310
| Unknown | BINDING |
AT5G13060 | Predictedinterologs mapping | FSW = 0.0319
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT5G02410 | Predictedinterologs mapping | FSW = 0.0592
| Unknown | DIE2/ALG10 FAMILY |
AT4G26550 | Predictedinterologs mapping | FSW = 0.0556
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT3G58490 | Predictedinterologs mapping | FSW = 0.0149
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT2G47760 | Predictedinterologs mapping | FSW = 0.0208
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT2G28850 | Predictedinterologs mapping | FSW = 0.1045
| Unknown | CYP710A3 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 3) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G18240 | Predictedinterologs mapping | FSW = 0.1526
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G57600 | Predictedinterologs mapping | FSW = 0.2350
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G24320 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT1G20575 | Predictedinterologs mapping | FSW = 0.0779
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G16900 | Predictedinterologs mapping | FSW = 0.0554
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G16560 | Predictedinterologs mapping | FSW = 0.1771
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G14290 | Predictedinterologs mapping | FSW = 0.0935
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G14230 | Predictedinterologs mapping | FSW = 0.0592
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G09460 | Predictedinterologs mapping | FSW = 0.2808
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G01910 | Predictedinterologs mapping | FSW = 0.0645
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0319
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.0693
| Unknown | NUCLEOTIDE BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0635
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0532
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.0399
| Unknown | SGA2 |
AT5G56330 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | ACA8 (ALPHA CARBONIC ANHYDRASE 8) CARBONATE DEHYDRATASE/ ZINC ION BINDING |
AT2G23780 | Predictedtwo hybrid | FSW = 0.0115
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454