Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10280 - ( unknown protein )
27 Proteins interacs with AT1G10280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | Predictedbiochemical | FSW = 0.0198
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0192
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0749
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G14320 | PredictedCo-purification | FSW = 0.0439
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G66250 | PredictedAffinity Capture-WesternReconstituted Complexbiochemical | FSW = 0.0282
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G53870 | Predictedbiochemical | FSW = 0.0220
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G18880 | PredictedPhenotypic Suppression | FSW = 0.0127
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0320
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G60360 | PredictedPhenotypic Enhancement | FSW = 0.0718
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G77990 | PredictedAffinity Capture-Western | FSW = 0.0207
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G34580 | PredictedAffinity Capture-MSbiochemical | FSW = 0.0644
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.0864
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.0532
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.1698
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G01430 | Predictedbiochemical | FSW = 0.0808
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06600 | Predictedbiochemical | FSW = 0.0936
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G54800 | Predictedinterologs mappinginterologs mapping | FSW = 0.1569
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G37420 | PredictedPhenotypic Suppression | FSW = 0.0483
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G68380 | PredictedPhylogenetic profile method | FSW = 0.0444
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454