Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10390 - ( nucleoporin family protein )

22 Proteins interacs with AT1G10390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G14850

Predicted

Affinity Capture-MS

FSW = 0.1553

Unknown

NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT1G79280

Predicted

Affinity Capture-Western

in vivo

FSW = 0.0320

Unknown

NUA (NUCLEAR PORE ANCHOR)
AT5G53480

Predicted

in vitro

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0689

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G47010

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0494

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT1G13120

Predicted

two hybrid

Co-expression

FSW = 0.2483

Unknown

EMB1745 (EMBRYO DEFECTIVE 1745)
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0100

Unknown

CHC1
AT1G10300Predicted

Affinity Capture-MS

FSW = 0.0128

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G80670

Predicted

Synthetic Lethality

in vivo

in vitro

Synthetic Lethality

Co-expression

FSW = 0.2178

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G16950

Predicted

Affinity Capture-MS

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0502

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G45000

Predicted

in vitro

FSW = 0.0374

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT4G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0817

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT3G03110

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.0613

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT1G22760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0354

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G02690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0527

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0469

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT3G47460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0477

Unknown

ATSMC2 TRANSPORTER
AT3G13224

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1429

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G08960Predicted

Affinity Capture-MS

FSW = 0.0865

Unknown

BINDING / PROTEIN TRANSPORTER
AT1G79000

Predicted

in vitro

in vivo

FSW = 0.0168

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT1G16710

Predicted

in vitro

in vivo

FSW = 0.0426

Unknown

HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT2G34357Predicted

Reconstituted Complex

FSW = 0.0334

Unknown

BINDING
AT1G59660Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5886

Unknown

NUCLEOPORIN FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454