Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10390 - ( nucleoporin family protein )
22 Proteins interacs with AT1G10390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G14850 | PredictedAffinity Capture-MS | FSW = 0.1553
| Unknown | NUP155 NUCLEOCYTOPLASMIC TRANSPORTER |
AT1G79280 | PredictedAffinity Capture-Westernin vivo | FSW = 0.0320
| Unknown | NUA (NUCLEAR PORE ANCHOR) |
AT5G53480 | Predictedin vitroAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0689
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G47010 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0494
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT1G13120 | Predictedtwo hybridCo-expression | FSW = 0.2483
| Unknown | EMB1745 (EMBRYO DEFECTIVE 1745) |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0100
| Unknown | CHC1 |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G80670 | PredictedSynthetic Lethalityin vivoin vitroSynthetic LethalityCo-expression | FSW = 0.2178
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G16950 | PredictedAffinity Capture-MSin vitroin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.0502
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G45000 | Predictedin vitro | FSW = 0.0374
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT4G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0817
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT3G03110 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0613
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT1G22760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0354
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G02690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0469
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT3G47460 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0477
| Unknown | ATSMC2 TRANSPORTER |
AT3G13224 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1429
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G08960 | PredictedAffinity Capture-MS | FSW = 0.0865
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT1G79000 | Predictedin vitroin vivo | FSW = 0.0168
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT1G16710 | Predictedin vitroin vivo | FSW = 0.0426
| Unknown | HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT2G34357 | PredictedReconstituted Complex | FSW = 0.0334
| Unknown | BINDING |
AT1G59660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5886
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454