Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10430 - ( PP2A-2 protein serine/threonine phosphatase )
59 Proteins interacs with AT1G10430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G53000 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.2667
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.1361
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.2642
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G56490 | Predictedtwo hybridtwo hybrid | FSW = 0.0321
| Class C:plasma membrane | ZINC-BINDING PROTEIN PUTATIVE / PROTEIN KINASE C INHIBITOR PUTATIVE |
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.1791
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G29810 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0054
| Class C:plasma membrane | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G47250 | PredictedAffinity Capture-MS | FSW = 0.1970
| Class C:plasma membrane | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G42500 | PredictedPhylogenetic profile method | FSW = 0.4628
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G13320 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0251
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G59830 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1704
| Class C:plasma membrane | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G21720 | PredictedAffinity Capture-MS | FSW = 0.1962
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.1953
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MS | FSW = 0.2246
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G10050 | PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0818
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G03240 | PredictedGene fusion method | FSW = 0.0476
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
AT3G58500 | PredictedPhylogenetic profile method | FSW = 0.3571
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedPhylogenetic profile method | FSW = 0.0482
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT5G03650 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT4G26720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1127
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G02740 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | CHROMATIN BINDING |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0152
| Unknown | CHC1 |
AT1G03280 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G53165 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G35530 | Predictedtwo hybridtwo hybrid | FSW = 0.0204
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT5G26980 | Predictedtwo hybridtwo hybrid | FSW = 0.0357
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT4G34270 | Predictedtwo hybridtwo hybridtwo hybridtwo hybrid | FSW = 0.0949
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0502
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G13060 | PredictedAffinity Capture-MS | FSW = 0.2073
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | PredictedAffinity Capture-MS | FSW = 0.1967
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MS | FSW = 0.1514
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G69960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2351
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07360 | Predictedtwo hybridtwo hybrid | FSW = 0.0440
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G34750 | Predictedtwo hybridtwo hybrid | FSW = 0.0192
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT4G16144 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK) |
AT5G43010 | Predictedtwo hybridtwo hybrid | FSW = 0.0404
| Unknown | RPT4A ATPASE |
AT5G58020 | Predictedtwo hybridtwo hybrid | FSW = 0.0350
| Unknown | UNKNOWN PROTEIN |
AT2G46290 | Predictedtwo hybridtwo hybrid | FSW = 0.0136
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
AT1G17720 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernsynthetic growth defectSynthetic Rescue | FSW = 0.0532
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G20330 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G13460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0752
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | H2AXA DNA BINDING |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT4G11820 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT1G56450 | PredictedAffinity Capture-MS | FSW = 0.2182
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G27430 | PredictedAffinity Capture-MS | FSW = 0.3116
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G19050 | Predictedinterologs mapping | FSW = 0.0336
| Unknown | ATP BINDING / PROTEIN BINDING |
AT1G50370 | Predictedinterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.1096
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT4G08960 | Predictedinterologs mappingReconstituted Complex | FSW = 0.1141
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT5G03470 | PredictedPhenotypic Suppression | FSW = 0.0301
| Unknown | ATB ALPHA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G44850 | Predictedtwo hybrid | FSW = 0.0123
| Unknown | PROTEIN KINASE-RELATED |
AT5G58575 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT1G48790 | Predictedtwo hybrid | FSW = 0.0361
| Unknown | MOV34 FAMILY PROTEIN |
AT4G37280 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | MRG FAMILY PROTEIN |
AT5G55260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G11650 | PredictedGene fusion method | FSW = 0.0227
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454