Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10450 - ( SNL6 (SIN3-LIKE 6) )
36 Proteins interacs with AT1G10450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | HISTONE H4 |
AT3G18190 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | CHAPERONIN PUTATIVE |
AT5G46330 | PredictedGene fusion method | FSW = 0.0586
| Unknown | FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G54610 | PredictedSynthetic Rescue | FSW = 0.1013
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G50670 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G12810 | PredictedSynthetic Lethality | FSW = 0.1292
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G27720 | Predictedtwo hybrid | FSW = 0.0033
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G38130 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2552
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT1G02740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1395
| Unknown | CHROMATIN BINDING |
AT2G47620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0664
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G18760 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G47690 | Predictedsynthetic growth defect | FSW = 0.1748
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G40820 | PredictedSynthetic Rescue | FSW = 0.0277
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G02690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0272
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G62600 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | TRANSPORTIN-SR-RELATED |
AT3G25100 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0887
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0490
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0316
| Unknown | H2AXA DNA BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0906
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0270
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1263
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0777
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1329
| Unknown | SGA2 |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1247
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G22590 | PredictedSynthetic Lethality | FSW = 0.1049
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.1505
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1313
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0904
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.2339
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.1591
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.1461
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G49540 | PredictedSynthetic Lethality | FSW = 0.1200
| Unknown | NUCLEOTIDE BINDING |
AT4G10310 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0992
| Unknown | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454