Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10450 - ( SNL6 (SIN3-LIKE 6) )

36 Proteins interacs with AT1G10450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0555

Unknown

HISTONE H4
AT3G18190

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

CHAPERONIN PUTATIVE
AT5G46330

Predicted

Gene fusion method

FSW = 0.0586

Unknown

FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT3G54610

Predicted

Synthetic Rescue

FSW = 0.1013

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G50670

Predicted

two hybrid

FSW = 0.0068

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G12810

Predicted

Synthetic Lethality

FSW = 0.1292

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G27720

Predicted

two hybrid

FSW = 0.0033

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G38130

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2552

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G02740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1395

Unknown

CHROMATIN BINDING
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0664

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G18760

Predicted

Synthetic Lethality

FSW = 0.0127

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G47690

Predicted

synthetic growth defect

FSW = 0.1748

Unknown

ATEB1A MICROTUBULE BINDING
AT5G40820

Predicted

Synthetic Rescue

FSW = 0.0277

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G02690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0272

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT5G62600

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

TRANSPORTIN-SR-RELATED
AT3G25100

Predicted

Affinity Capture-MS

FSW = 0.0283

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0887

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G23070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0490

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G08880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0316

Unknown

H2AXA DNA BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0906

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G38630

Predicted

synthetic growth defect

FSW = 0.0270

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT3G58560

Predicted

synthetic growth defect

FSW = 0.1263

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0777

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.1329

Unknown

SGA2
AT1G14400

Predicted

synthetic growth defect

FSW = 0.1247

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G22590

Predicted

Synthetic Lethality

FSW = 0.1049

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G55255Predicted

Synthetic Lethality

FSW = 0.1505

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.1313

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0904

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.2339

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT5G50320

Predicted

Synthetic Lethality

FSW = 0.1591

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G13680

Predicted

Synthetic Lethality

FSW = 0.1461

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G49540

Predicted

Synthetic Lethality

FSW = 0.1200

Unknown

NUCLEOTIDE BINDING
AT4G10310

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0992

Unknown

HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454