Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10580 - ( transducin family protein / WD-40 repeat family protein )
45 Proteins interacs with AT1G10580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimental | FSW = 0.1832
| Unknown | MOS4 (MODIFIER OF SNC14) |
AT4G14960 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0196
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G33210 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0040
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G04820 | PredictedSynthetic Rescue | FSW = 0.0168
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G23990 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0108
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G13440 | PredictedPhenotypic Suppression | FSW = 0.0457
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G20960 | PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G12780 | PredictedPhenotypic Suppression | FSW = 0.0216
| Unknown | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2225
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G80070 | PredictedSynthetic RescueSynthetic LethalitySynthetic LethalityPhenotypic Suppression | FSW = 0.2372
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT1G22170 | PredictedPhenotypic Suppression | FSW = 0.1053
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT5G53480 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0052
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1330
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G24490 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0132
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT5G44200 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT3G13920 | PredictedPhenotypic Suppression | FSW = 0.0228
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1488
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22830 | PredictedPhenotypic Suppression | FSW = 0.0208
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
AT2G41840 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
AT3G26560 | PredictedSynthetic Lethality | FSW = 0.3145
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.0050
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G12530 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0025
| Unknown | PSF2 |
AT4G15900 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G13010 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingin vitrointeraction prediction | FSW = 0.0677
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G03140 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1307
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1683
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G65660 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.2071
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT4G34100 | PredictedAffinity Capture-Western | FSW = 0.0185
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G22840 | PredictedSynthetic Lethality | FSW = 0.0194
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G41770 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityAffinity Capture-MSinteraction prediction | FSW = 0.1739
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G55460 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0429
| Unknown | KIN17 DNA-BINDING PROTEIN-RELATED |
AT1G74310 | PredictedPhenotypic Suppression | FSW = 0.0088
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G80930 | PredictedAffinity Capture-MS | FSW = 0.3009
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G17280 | PredictedPhenotypic Suppression | FSW = 0.0207
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT2G27970 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0135
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G16710 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0319
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G17910 | PredictedSynthetic Lethality | FSW = 0.0167
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT5G14850 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0167
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G28740 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSinteraction prediction | FSW = 0.2780
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT3G13210 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1675
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT2G27960 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0194
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G17530 | PredictedSynthetic Lethality | FSW = 0.0640
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G62890 | PredictedGene fusion method | FSW = 0.1224
| Unknown | BINDING |
AT1G34050 | PredictedGene fusion method | FSW = 0.1050
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454