Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10630 - ( ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP binding / copper ion binding / phospholipase activator/ protein binding )

31 Proteins interacs with AT1G10630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62290

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5691

Class C:

vacuole

plasma membrane

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT2G45200

Predicted

interologs mapping

FSW = 0.0451

Class C:

vacuole

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G67560

Predicted

Phylogenetic profile method

FSW = 0.6275

Class C:

vacuole

ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING
AT2G47170

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6939

Class C:

plasma membrane

ARF1A1C GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT2G24765

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5898

Class C:

plasma membrane

ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING
AT1G70490Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3323

Class C:

plasma membrane

ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT1G13210

Predicted

interologs mapping

FSW = 0.0349

Class C:

plasma membrane

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G10130

Predicted

interologs mapping

Gene neighbors method

Co-expression

FSW = 0.0395

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G07140

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT1G60620

Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G21380

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0275

Unknown

VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN
AT2G35210

Predicted

biochemical

FSW = 0.0965

Unknown

RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G52360

Predicted

interologs mapping

interologs mapping

FSW = 0.0780

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT5G10480

Predicted

interologs mapping

FSW = 0.0627

Unknown

PAS2 (PASTICCINO 2) ENOYL-COA HYDRATASE/ PROTEIN TYROSINE PHOSPHATASE
AT1G24320

Predicted

interologs mapping

FSW = 0.0381

Unknown

ALPHA-GLUCOSIDASE PUTATIVE
AT1G01910

Predicted

interologs mapping

FSW = 0.0653

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G06100

Predicted

two hybrid

FSW = 0.0428

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT3G13224

Predicted

two hybrid

FSW = 0.0214

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54230

Predicted

two hybrid

FSW = 0.0494

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G25800

Predicted

two hybrid

FSW = 0.0480

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G22950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6208

Unknown

ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING
AT5G52210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2653

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G17060

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6939

Unknown

ATARFB1B GTP BINDING
AT2G15310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6667

Unknown

ATARFB1A (ADP-RIBOSYLATION FACTOR B1A) GTP BINDING
AT1G23490

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6553

Unknown

ATARF1 (ADP-RIBOSYLATION FACTOR 1) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT3G03120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6939

Unknown

ATARFB1C (ADP-RIBOSYLATION FACTOR B1C) GTP BINDING
AT5G14670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4719

Unknown

ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT1G02430

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.6275

Unknown

ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING
AT1G02440Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.6939

Unknown

ATARFD1A (ADP-RIBOSYLATION FACTOR D1A) GTP BINDING
AT5G37680

Predicted

Phylogenetic profile method

FSW = 0.6553

Unknown

ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING
AT3G49860

Predicted

Phylogenetic profile method

FSW = 0.6275

Unknown

ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454