Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10900 - ( phosphatidylinositol-4-phosphate 5-kinase family protein )
23 Proteins interacs with AT1G10900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G44110 | PredictedSynthetic Lethality | FSW = 0.0351
| Class C:plasma membrane | ATJ3 PROTEIN BINDING |
AT1G49340 | Predictedinterologs mapping | FSW = 0.0952
| Class C:plasma membrane | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0088
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G66410 | Predictedinterologs mapping | FSW = 0.0032
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0076
| Unknown | UNKNOWN PROTEIN |
AT3G05630 | Predictedin vitroin vivo | FSW = 0.0280
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G44510 | Predictedinterologs mapping | FSW = 0.0212
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT4G25630 | PredictedSynthetic Lethality | FSW = 0.0034
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G05520 | PredictedSynthetic Lethality | FSW = 0.0788
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT1G70980 | PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | SYNC3 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G50030 | Predictedinterologs mappinginterologs mapping | FSW = 0.0256
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT4G26070 | Predictedinterologs mapping | FSW = 0.0228
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT3G16785 | Predictedin vivo | FSW = 0.0750
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
AT1G51310 | PredictedSynthetic Lethality | FSW = 0.0166
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G71790 | PredictedSynthetic Lethality | FSW = 0.0706
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0345
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0246
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.0316
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G14480 | PredictedSynthetic Lethality | FSW = 0.0664
| Unknown | PROTEIN BINDING |
AT4G30510 | PredictedSynthetic Lethality | FSW = 0.0362
| Unknown | ATATG18B |
AT1G12270 | PredictedSynthetic Lethality | FSW = 0.0653
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G77740 | PredictedGene fusion methodCo-expression | FSW = 0.1111
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE PUTATIVE / PIP KINASE PUTATIVE / PTDINS(4)P-5-KINASE PUTATIVE / DIPHOSPHOINOSITIDE KINASE PUTATIVE |
AT3G53700 | PredictedGene fusion method | FSW = 0.1481
| Unknown | MEE40 (MATERNAL EFFECT EMBRYO ARREST 40) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454