Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10940 - ( SNRK24 (SNF1-RELATED PROTEIN KINASE 24) kinase )
34 Proteins interacs with AT1G10940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G57360 | Experimentaltwo hybridtwo hybridtwo hybridReconstituted ComplexAffinity Capture-Westernaffinity technologyin vitro | FSW = 0.0781
| Unknown | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G18915 | Experimentaltwo hybrid | FSW = 0.0456
| Unknown | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02440 | Experimentaltwo hybridtwo hybridfluorescence acceptor donor pairfluorescence acceptor donor pairReconstituted Complexin vitrofluorescence acceptor donor pair | FSW = 0.0580
| Unknown | EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE |
AT1G30950 | Experimentalpull downAffinity Capture-Westernaffinity technology | FSW = 0.0547
| Unknown | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G25490 | Experimentalpull down | FSW = 0.0186
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02570 | Experimentaltwo hybridtwo hybridAffinity Capture-Westerntwo hybridfluorescence acceptor donor pairaffinity technology | FSW = 0.0729
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT5G25350 | Experimentalpull downtwo hybrid | FSW = 0.0595
| Unknown | EBF2 (EIN3-BINDING F BOX PROTEIN 2) PROTEIN BINDING |
AT3G54650 | Experimental | FSW = 0.0275
| Unknown | FBL17 UBIQUITIN-PROTEIN LIGASE |
AT3G62980 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0412
| Unknown | TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G68050 | Experimental | FSW = 0.0431
| Unknown | FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE |
AT3G61590 | Experimental | FSW = 0.0270
| Unknown | HWS (HAWAIIAN SKIRT) UBIQUITIN-PROTEIN LIGASE |
AT2G39940 | Experimental | FSW = 0.0338
| Unknown | COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.2750
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT5G10350 | PredictedReconstituted Complex | FSW = 0.0038
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3912
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3718
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2351
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0053
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.3474
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3420
| Unknown | UNKNOWN PROTEIN |
AT2G18510 | PredictedGene fusion method | FSW = 0.0083
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3750
| Unknown | TRANSCRIPTION FACTOR |
AT1G02730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3368
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2615
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.2813
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G20410 | Predictedtwo hybrid | FSW = 0.2678
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31060 | PredictedReconstituted Complextwo hybrid | FSW = 0.2712
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2470
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G53880 | PredictedCo-purification | FSW = 0.1933
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3403
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3644
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G35390 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0589
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454