Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11250 - ( SYP125 (SYNTAXIN OF PLANTS 125) SNAP receptor )
47 Proteins interacs with AT1G11250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.4448
| Class C:plasma membranecytosol | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1753
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.2980
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.2680
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.1066
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.3972
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.3113
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G08560 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0271
| Class C:plasma membrane | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0896
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.1496
| Class C:plasma membrane | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT4G03330 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1008
| Class C:plasma membrane | SYP123 (SYNTAXIN OF PLANTS 123) SNAP RECEPTOR |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.1273
| Class C:cytosol | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2228
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.1916
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT5G55630 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0892
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2905
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.1624
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.2206
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1867
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.2195
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.3011
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.3440
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.1414
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.1112
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G62960 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G06420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3703
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.2241
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2981
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19570 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | CDA1 (CYTIDINE DEAMINASE 1) CYTIDINE DEAMINASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.1796
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.3278
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.1290
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.0960
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.2286
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.1304
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G59790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0749
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.1299
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | FERREDOXIN HYDROGENASE |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.2284
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2655
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0973
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.3034
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.1589
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454