Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11250 - ( SYP125 (SYNTAXIN OF PLANTS 125) SNAP receptor )

47 Proteins interacs with AT1G11250
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G63290

Predicted

Affinity Capture-MS

FSW = 0.4448

Class C:

plasma membrane

cytosol

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.1753

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.2980

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G12580

Predicted

Affinity Capture-MS

FSW = 0.2680

Class C:

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.1066

Class C:

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.3972

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT3G61430

Predicted

Affinity Capture-MS

FSW = 0.3113

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G08560

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0271

Class C:

plasma membrane

SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT4G28950

Predicted

Affinity Capture-MS

FSW = 0.0896

Class C:

plasma membrane

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT3G09740

Predicted

Affinity Capture-MS

FSW = 0.1496

Class C:

plasma membrane

SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT4G03330

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1008

Class C:

plasma membrane

SYP123 (SYNTAXIN OF PLANTS 123) SNAP RECEPTOR
AT4G35640

Predicted

Affinity Capture-MS

FSW = 0.1273

Class C:

cytosol

ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.2228

Class C:

cytosol

A37 PROTEIN HETERODIMERIZATION
AT3G13080

Predicted

Affinity Capture-MS

FSW = 0.1916

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT5G55630

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT2G29990

Predicted

Affinity Capture-MS

FSW = 0.0892

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT5G24400

Predicted

Affinity Capture-MS

FSW = 0.2905

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT2G22780

Predicted

Affinity Capture-MS

FSW = 0.1624

Unknown

PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.2206

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.3333

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.1867

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.2195

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G23460

Predicted

Affinity Capture-MS

FSW = 0.3011

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G18450

Predicted

Affinity Capture-MS

FSW = 0.3440

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G33720

Predicted

Affinity Capture-MS

FSW = 0.1414

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G76400

Predicted

Affinity Capture-MS

FSW = 0.1112

Unknown

RIBOPHORIN I FAMILY PROTEIN
AT3G62960

Predicted

two hybrid

FSW = 0.0191

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT5G06420

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3703

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G54290

Predicted

Affinity Capture-MS

FSW = 0.2241

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.2981

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G19570

Predicted

Affinity Capture-MS

FSW = 0.0421

Unknown

CDA1 (CYTIDINE DEAMINASE 1) CYTIDINE DEAMINASE
AT2G19910

Predicted

Affinity Capture-MS

FSW = 0.1796

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G37540

Predicted

Affinity Capture-MS

FSW = 0.3278

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.1290

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G43360

Predicted

Affinity Capture-MS

FSW = 0.0960

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G11900

Predicted

Affinity Capture-MS

FSW = 0.2286

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.0437

Unknown

LPAT5 ACYLTRANSFERASE
AT3G49880

Predicted

Affinity Capture-MS

FSW = 0.1304

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G59790

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0749

Unknown

ATMPK10 MAP KINASE/ KINASE
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.1299

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G16440

Predicted

Affinity Capture-MS

FSW = 0.1111

Unknown

FERREDOXIN HYDROGENASE
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.2284

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.2655

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G24410

Predicted

Affinity Capture-MS

FSW = 0.0973

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G46150

Predicted

Affinity Capture-MS

FSW = 0.3034

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G57330

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

ALDOSE 1-EPIMERASE FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

FSW = 0.1589

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454