Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G11320 - ( unknown protein )
35 Proteins interacs with AT1G11320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07100 | Predictedtwo hybrid | FSW = 0.0530
| Class C:unclear | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT4G36750 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1039
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0137
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G09660 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G05560 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT1G21630 | Predictedin vivo | FSW = 0.0401
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G58800 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G59520 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | ZIP2 COPPER ION TRANSMEMBRANE TRANSPORTER/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / ZINC ION TRANSMEMBRANE TRANSPORTER |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G16970 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT5G43840 | Predictedtwo hybrid | FSW = 0.1220
| Unknown | AT-HSFA6A DNA BINDING / TRANSCRIPTION FACTOR |
AT5G50810 | Predictedtwo hybridAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.0229
| Unknown | TIM8 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0640
| Unknown | REV7 DNA BINDING |
AT2G04660 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G07690 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G26210 | Predictedtwo hybridtwo hybridin vivoAffinity Capture-MS | FSW = 0.0355
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G04240 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G09230 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G49110 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | UNKNOWN PROTEIN |
AT5G59160 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G48790 | Predictedin vivoin vivotwo hybridAffinity Capture-MS | FSW = 0.0282
| Unknown | MOV34 FAMILY PROTEIN |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.0280
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0543
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G71530 | Predictedtwo hybrid | FSW = 0.1333
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.1353
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G05040 | Predictedtwo hybrid | FSW = 0.1491
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G61210 | Predictedtwo hybrid | FSW = 0.0516
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1322
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G38110 | Predictedtwo hybrid | FSW = 0.0800
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G61220 | Predictedtwo hybrid | FSW = 0.0842
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
AT1G59580 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G14880 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454