Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11510 - ( DNA-binding storekeeper protein-related )
71 Proteins interacs with AT1G11510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G09590
   | Predictedsynthetic growth defect | FSW = 0.1678
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT3G08710
| Predictedsynthetic growth defect | FSW = 0.0142
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G44170
| Predictedsynthetic growth defect | FSW = 0.0228
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
| AT5G13450
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.2892
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
| AT3G22890
| Predictedsynthetic growth defect | FSW = 0.2608
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
| AT4G33650
| Predictedsynthetic growth defect | FSW = 0.0710
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
| AT5G09660
| Predictedsynthetic growth defect | FSW = 0.2224
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
| AT1G74710
| Predictedsynthetic growth defect | FSW = 0.2019
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT5G16150
| PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G56050
| Predictedsynthetic growth defect | FSW = 0.1473
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT5G15450
| Predictedsynthetic growth defect | FSW = 0.1983
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G42590
| Predictedsynthetic growth defect | FSW = 0.0104
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G60540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.4803
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
| AT4G36490
| Predictedsynthetic growth defect | FSW = 0.1587
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT1G55690
| Predictedsynthetic growth defect | FSW = 0.0150
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT1G04750
| Predictedsynthetic growth defect | FSW = 0.2342
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT2G32670
| Predictedsynthetic growth defect | FSW = 0.1619
| Unknown | ATVAMP725 |
| AT2G39480
| PredictedSynthetic Lethality | FSW = 0.0130
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G02450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1190
| Unknown | GLYCINE-RICH PROTEIN |
| AT1G80050
| Predictedsynthetic growth defect | FSW = 0.2396
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
| AT2G37790
| Predictedsynthetic growth defect | FSW = 0.1004
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G02490
| Predictedsynthetic growth defect | FSW = 0.0086
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
| AT1G21700
| Predictedsynthetic growth defect | FSW = 0.1232
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT2G34450
| PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
| AT4G09800 | PredictedSynthetic Lethality | FSW = 0.0645
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G33540
| Predictedsynthetic growth defect | FSW = 0.0476
| Unknown | CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3) CTD PHOSPHATASE/ PHOSPHOPROTEIN PHOSPHATASE |
| AT3G66656
| Predictedsynthetic growth defect | FSW = 0.0185
| Unknown | AGL91 TRANSCRIPTION FACTOR |
| AT5G47630
| Predictedsynthetic growth defect | FSW = 0.1210
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT2G30160
| Predictedsynthetic growth defect | FSW = 0.3310
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT2G19980
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-WesternCo-purification | FSW = 0.1827
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT5G08335
| PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
| AT3G07140
| Predictedsynthetic growth defect | FSW = 0.1670
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
| AT3G60360
| Predictedsynthetic growth defect | FSW = 0.1911
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
| AT4G39200
| Predictedbiochemicalsynthetic growth defect | FSW = 0.3763
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT4G27070
| PredictedbiochemicalbiochemicalColocalization | FSW = 0.1457
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
| AT4G16420
| PredictedSynthetic Lethality | FSW = 0.1054
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT1G10090
| Predictedsynthetic growth defect | FSW = 0.1565
| Unknown | UNKNOWN PROTEIN |
| AT1G11755
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2941
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
| AT1G80530
| Predictedsynthetic growth defect | FSW = 0.0443
| Unknown | NODULIN FAMILY PROTEIN |
| AT1G80710
| PredictedAffinity Capture-WesternSynthetic Lethalitysynthetic growth defect | FSW = 0.0877
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G43190
| PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0288
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
| AT5G24840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1184
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G42720
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSReconstituted ComplexCo-purificationsynthetic growth defect | FSW = 0.2300
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT1G20693
| Predictedsynthetic growth defect | FSW = 0.2362
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G25155 | Predictedsynthetic growth defect | FSW = 0.2530
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT1G26690
| Predictedsynthetic growth defect | FSW = 0.1806
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT1G35350
| Predictedsynthetic growth defect | FSW = 0.2779
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
| AT1G47830
| Predictedsynthetic growth defect | FSW = 0.1626
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
| AT1G62880
| Predictedsynthetic growth defect | FSW = 0.0083
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G66590
| Predictedsynthetic growth defect | FSW = 0.1437
| Unknown | COX19 FAMILY PROTEIN |
| AT1G78770
| PredictedSynthetic Lethality | FSW = 0.1437
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
| AT2G15910
| Predictedsynthetic growth defect | FSW = 0.2022
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| AT2G20290
| PredictedbiochemicalAffinity Capture-MS | FSW = 0.0950
| Unknown | XIG MOTOR/ PROTEIN BINDING |
| AT3G11230
| Predictedsynthetic growth defect | FSW = 0.2222
| Unknown | YIPPEE FAMILY PROTEIN |
| AT3G12200
| PredictedbiochemicalbiochemicalColocalization | FSW = 0.1553
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G22290
| Predictedsynthetic growth defect | FSW = 0.2557
| Unknown | UNKNOWN PROTEIN |
| AT3G24010
| Predictedsynthetic growth defect | FSW = 0.1827
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
| AT3G45240
| Predictedsynthetic growth defect | FSW = 0.1582
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
| AT3G53030
| Predictedsynthetic growth defect | FSW = 0.2017
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
| AT3G59540 | PredictedSynthetic Lethality | FSW = 0.2052
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
| AT4G00800 | Predictedsynthetic growth defect | FSW = 0.1277
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT4G19560
| Predictedsynthetic growth defect | FSW = 0.2300
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
| AT4G19645
| Predictedsynthetic growth defect | FSW = 0.0440
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G21490
| Predictedsynthetic growth defect | FSW = 0.2250
| Unknown | NDB3 NADH DEHYDROGENASE |
| AT4G27130
| Predictedsynthetic growth defect | FSW = 0.2759
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT4G29580
| Predictedsynthetic growth defect | FSW = 0.2009
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
| AT5G01430
| Predictedsynthetic growth defect | FSW = 0.1469
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT5G13860
| Predictedbiochemical | FSW = 0.2080
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
| AT5G16980
| Predictedsynthetic growth defect | FSW = 0.2375
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G45620
| Predictedsynthetic growth defect | FSW = 0.2507
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT5G65980
| Predictedsynthetic growth defect | FSW = 0.0433
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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