Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11660 - ( heat shock protein putative )
39 Proteins interacs with AT1G11660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0088
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G44110 | Predictedinterologs mappinginterologs mapping | FSW = 0.0556
| Unknown | ATJ3 PROTEIN BINDING |
AT3G08530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0265
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G18080 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT1G16030 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationReconstituted Complex | FSW = 0.0464
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT3G11630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0426
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G19960 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT1G79920 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0416
| Unknown | ATP BINDING |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G79930 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2025
| Unknown | HSP91 ATP BINDING |
AT1G56110 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G18880 | Predictedsynthetic growth defect | FSW = 0.0494
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT2G17270 | PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G55860 | PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G37925 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | SGS3 (SUPPRESSOR OF GENE SILENCING 3) |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.0336
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT5G08590 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | SNRK21 (SNF1-RELATED PROTEIN KINASE 21) KINASE/ PROTEIN KINASE |
AT5G13400 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G13460 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G12040 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT1G12270 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0617
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0228
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0248
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G07120 | PredictedSynthetic Lethality | FSW = 0.0346
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454