Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11755 - ( LEW1 (LEAF WILTING 1) dehydrodolichyl diphosphate synthase )
16 Proteins interacs with AT1G11755Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13450 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2147
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT5G60540 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1631
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT4G02450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3613
| Unknown | GLYCINE-RICH PROTEIN |
AT2G30160 | PredictedSynthetic Lethality | FSW = 0.1245
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1633
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G08335 | PredictedAffinity Capture-MS | FSW = 0.0677
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT4G39200 | PredictedAffinity Capture-MS | FSW = 0.1653
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G27070 | PredictedAffinity Capture-MSbiochemical | FSW = 0.1296
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT3G26340 | Predictedtwo hybrid | FSW = 0.0495
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
AT1G11510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2941
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT5G42720 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2469
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G25260 | PredictedAffinity Capture-Western | FSW = 0.0084
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.1138
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT3G12200 | Predictedbiochemical | FSW = 0.0831
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.1167
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G24840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1005
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454