Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G11800 - ( endonuclease/exonuclease/phosphatase family protein )

17 Proteins interacs with AT1G11800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G56000

Predicted

two hybrid

FSW = 0.0317

Unknown

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT5G20290

Predicted

two hybrid

FSW = 0.0063

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G45770

Predicted

two hybrid

FSW = 0.0163

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT4G32520

Predicted

two hybrid

FSW = 0.0529

Unknown

SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT5G52640

Predicted

two hybrid

FSW = 0.0041

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G58660

Predicted

two hybrid

FSW = 0.0084

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT5G13430

Predicted

two hybrid

FSW = 0.0504

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT1G71230

Predicted

two hybrid

FSW = 0.0504

Unknown

CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT1G22920

Predicted

two hybrid

FSW = 0.0659

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT3G18850

Predicted

two hybrid

FSW = 0.0233

Unknown

LPAT5 ACYLTRANSFERASE
AT4G23930

Predicted

two hybrid

FSW = 0.0348

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT5G63740

Predicted

two hybrid

FSW = 0.0533

Unknown

ZINC FINGER PROTEIN-RELATED
AT3G57870

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0229

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT5G48700

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0635

Unknown

UBIQUITIN-RELATED
AT5G37890

Predicted

Affinity Capture-MS

in vivo

Co-expression

FSW = 0.0727

Unknown

SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE
AT5G17220

Predicted

two hybrid

FSW = 0.0426

Unknown

ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE
AT1G75020

Predicted

two hybrid

FSW = 0.0972

Unknown

LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454