Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11800 - ( endonuclease/exonuclease/phosphatase family protein )
17 Proteins interacs with AT1G11800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56000 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT5G20290 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G45770 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G32520 | Predictedtwo hybrid | FSW = 0.0529
| Unknown | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G58660 | Predictedtwo hybrid | FSW = 0.0084
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G13430 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
AT1G71230 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT1G22920 | Predictedtwo hybrid | FSW = 0.0659
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT3G18850 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G23930 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G63740 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G57870 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0229
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G48700 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0635
| Unknown | UBIQUITIN-RELATED |
AT5G37890 | PredictedAffinity Capture-MSin vivoCo-expression | FSW = 0.0727
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT5G17220 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE |
AT1G75020 | Predictedtwo hybrid | FSW = 0.0972
| Unknown | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454