Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11860 - ( aminomethyltransferase putative )

10 Proteins interacs with AT1G11860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0185

Class C:

plastid

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
ATMG01360Predicted

Synthetic Rescue

FSW = 0.1429

Class C:

mitochondrion

CYTOCHROME C OXIDASE SUBUNIT 1
AT5G12480

Predicted

biochemical

FSW = 0.0124

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G24820

Predicted

two hybrid

two hybrid

FSW = 0.0232

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT2G07695

Predicted

Synthetic Rescue

FSW = 0.1303

Unknown

CYTOCHROME C OXIDASE SUBUNIT II PUTATIVE
AT1G19730

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.0284

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT3G60240

Predicted

biochemical

FSW = 0.0115

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT5G49970

Predicted

two hybrid

FSW = 0.0230

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G66640

Predicted

biochemical

FSW = 0.0131

Unknown

DAR3 (DA1-RELATED PROTEIN 3)

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454