Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11870 - ( SRS (SERYL-TRNA SYNTHETASE) serine-tRNA ligase )
48 Proteins interacs with AT1G11870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0141
| Class C:plastidmitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G13490 | Predictedpull down | FSW = 0.0295
| Class C:plastidmitochondrion | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G78380 | Predictedpull down | FSW = 0.0882
| Class C:plastid | ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT3G09630 | PredictedAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.0326
| Class C:plastid | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.0095
| Class C:plastid | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0169
| Class C:plastid | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0396
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0082
| Class C:mitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G59280 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:mitochondrion | TXR1 (THAXTOMIN A RESISTANT 1) |
AT1G50940 | Predictedtwo hybrid | FSW = 0.0413
| Class C:mitochondrion | ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA) FAD BINDING / ELECTRON CARRIER |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT4G36490 | PredictedSynthetic Lethalitysynthetic growth defectAffinity Capture-Westernsynthetic growth defectsynthetic growth defectSynthetic Lethalityinterologs mapping | FSW = 0.1015
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT4G26720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0192
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G60980 | PredictedReconstituted ComplexSynthetic Lethality | FSW = 0.0702
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G38880 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-purificationPhenotypic Enhancementsynthetic growth defect | FSW = 0.1613
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0579
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Suppression | FSW = 0.0482
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G29540 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0950
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G20850 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G20050 | Predictedinterologs mapping | FSW = 0.0429
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G44680 | Predictedpull down | FSW = 0.0180
| Unknown | METHYLADENINE GLYCOSYLASE FAMILY PROTEIN |
AT3G13070 | Predictedpull down | FSW = 0.0177
| Unknown | CBS DOMAIN-CONTAINING PROTEIN / TRANSPORTER ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0429
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G77780 | PredictedSynthetic Lethality | FSW = 0.1404
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0167
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0087
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G15970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G24010 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0593
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G04700 | Predictedinterologs mappinginterologs mapping | FSW = 0.1221
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G14050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0053
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G14180 | PredictedSynthetic Lethality | FSW = 0.0576
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0078
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | EXORIBONUCLEASE-RELATED |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0377
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G55300 | PredictedSynthetic Rescue | FSW = 0.0647
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G12200 | Predictedinterologs mapping | FSW = 0.1003
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G15460 | Predictedinterologs mapping | FSW = 0.0247
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.1090
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.0446
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G62760 | Predictedinterologs mapping | FSW = 0.0998
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0549
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G52380 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0129
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G27470 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0462
| Unknown | SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454