Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11960 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN plasma membrane EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF221 (InterProIPR003864) BEST Arabidopsis thaliana protein match is early-responsive to dehydration protein-related / ERD protein-related (TAIRAT1G623201) Has 746 Blast hits to 706 proteins in 111 species Archae - 0 Bacteria - 4 Metazoa - 131 Fungi - 370 Plants - 224 Viruses - 0 Other Eukaryotes - 17 (source NCBI BLink) )

9 Proteins interacs with AT1G11960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02500

Predicted

Reconstituted Complex

Co-purification

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Co-purification

Synthetic Lethality

FSW = 0.1333

Class C:

plasma membrane

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G14980Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.3030

Unknown

PHD FINGER TRANSCRIPTION FACTOR PUTATIVE
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0112

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.0309

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G32140

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Reconstituted Complex

FSW = 0.2742

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF6 TRANSMEMBRANE (INTERPROIPR000620) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEMBRANE PROTEIN (TAIRAT3G070801) HAS 1078 BLAST HITS TO 1078 PROTEINS IN 273 SPECIES ARCHAE - 20 BACTERIA - 294 METAZOA - 244 FUNGI - 147 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 332 (SOURCE NCBI BLINK)
AT3G09640

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0855

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT4G27960

Predicted

Affinity Capture-Western

FSW = 0.0238

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0286

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454