Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12110 - ( NRT11 nitrate transmembrane transporter/ transporter )
36 Proteins interacs with AT1G12110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G30270 | Experimentaltwo hybridprotein complementation assaybiochemical | FSW = 0.0171
| Class B:unclearplasma membrane | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0193
| Class C:plasma membrane | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G59740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5811
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G33440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7554
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G54140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7554
| Class C:plasma membrane | PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT3G53960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5637
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G21680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3313
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G16180 | PredictedPhylogenetic profile method | FSW = 0.6626
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G12360 | PredictedGene fusion method | FSW = 0.0391
| Class C:plasma membrane | ITN1 (INCREASED TOLERANCE TO NACL) PROTEIN BINDING |
AT2G02040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7554
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G52190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.0458
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G46110 | Predictedtwo hybrid | FSW = 0.0600
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G43810 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.0093
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0130
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G17520 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G56920 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0229
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT1G16360 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G22540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7554
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G32450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | NRT15 (NITRATE TRANSPORTER 15) NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G68570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7708
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G27040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2965
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT5G46040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7708
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G19640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G62200 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7948
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G46050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | PTR3 (PEPTIDE TRANSPORTER 3) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT2G02020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7554
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G13400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5723
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G40460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7406
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G26690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7869
| Unknown | NITRATE TRANSPORTER (NTP2) |
AT5G01180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7406
| Unknown | PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER |
AT3G21670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1500
| Unknown | NITRATE TRANSPORTER (NTP3) |
AT1G18880 | PredictedPhylogenetic profile method | FSW = 0.7708
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454