Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G12270 - ( stress-inducible protein putative )
30 Proteins interacs with AT1G12270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13860 | PredictedGene fusion method | FSW = 0.0342
| Unknown | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT1G44170 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT3G44110 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0949
| Unknown | ATJ3 PROTEIN BINDING |
AT1G16030 | PredictedPhenotypic EnhancementAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0571
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G52640 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.0159
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G54610 | PredictedGene fusion method | FSW = 0.0756
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G30110 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G10900 | PredictedSynthetic Lethality | FSW = 0.0653
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G62740 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4817
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT2G41500 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0149
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT1G18040 | PredictedSynthetic LethalityCo-expression | FSW = 0.0250
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT4G18880 | Predictedsynthetic growth defect | FSW = 0.0617
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT5G41360 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0424
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT5G40820 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT3G47460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0365
| Unknown | ATSMC2 TRANSPORTER |
AT3G58560 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G74310 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0927
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G11660 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0617
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G77720 | PredictedSynthetic LethalityCo-expression | FSW = 0.0678
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04940 | PredictedSynthetic LethalityCo-expression | FSW = 0.0279
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G05040 | PredictedGene fusion methodCo-expression | FSW = 0.3240
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G12400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0424
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G18610 | PredictedGene fusion method | FSW = 0.1143
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G741501) HAS 8761 BLAST HITS TO 4412 PROTEINS IN 271 SPECIES ARCHAE - 12 BACTERIA - 304 METAZOA - 4209 FUNGI - 851 PLANTS - 1246 VIRUSES - 11 OTHER EUKARYOTES - 2128 (SOURCE NCBI BLINK) |
AT1G66120 | PredictedGene fusion method | FSW = 0.0557
| Unknown | ACYL-ACTIVATING ENZYME 11 (AAE11) |
AT2G46950 | PredictedGene fusion method | FSW = 0.1765
| Unknown | CYP709B2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT5G17380 | PredictedGene fusion method | FSW = 0.1662
| Unknown | PYRUVATE DECARBOXYLASE FAMILY PROTEIN |
AT1G26900 | PredictedGene fusion method | FSW = 0.1306
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454