Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12340 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN intracellular signaling cascade LOCATED IN membrane EXPRESSED IN male gametophyte pollen tube EXPRESSED DURING L mature pollen stage M germinated pollen stage CONTAINS InterPro DOMAIN/s Cornichon (InterProIPR003377) BEST Arabidopsis thaliana protein match is cornichon family protein (TAIRAT1G123901) Has 463 Blast hits to 463 proteins in 125 species Archae - 0 Bacteria - 0 Metazoa - 278 Fungi - 110 Plants - 41 Viruses - 0 Other Eukaryotes - 34 (source NCBI BLink) )

35 Proteins interacs with AT1G12340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G31780

Predicted

interologs mapping

FSW = 0.1731

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200

Predicted

interologs mapping

FSW = 0.2095

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT4G04910

Predicted

interologs mapping

FSW = 0.1048

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G30710

Predicted

interologs mapping

FSW = 0.2344

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0160

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G09180

Predicted

Reconstituted Complex

FSW = 0.1060

Unknown

ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING
AT5G23630

Predicted

interologs mapping

FSW = 0.1712

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

interologs mapping

FSW = 0.1589

Unknown

SEC22 TRANSPORTER
AT1G13210

Predicted

interologs mapping

FSW = 0.0647

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT2G17520

Predicted

interologs mapping

FSW = 0.0735

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT2G41380

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0142

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT1G02410

Predicted

two hybrid

FSW = 0.0710

Unknown

CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.1197

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G07290

Predicted

interologs mapping

FSW = 0.2849

Unknown

NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT1G10130

Predicted

interologs mapping

FSW = 0.1176

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G05710

Predicted

interologs mapping

FSW = 0.1898

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G19720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1355

Unknown

RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0440

Unknown

PUX4 PROTEIN BINDING
AT4G10360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0779

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT5G52210

Predicted

interologs mapping

FSW = 0.1425

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT3G03180

Predicted

interologs mapping

FSW = 0.1628

Unknown

GOT1-LIKE FAMILY PROTEIN
AT2G35210

Predicted

interologs mapping

FSW = 0.1877

Unknown

RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G34770

Predicted

interologs mapping

FSW = 0.1394

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT1G52360

Predicted

interologs mapping

FSW = 0.2188

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G16560

Predicted

interologs mapping

FSW = 0.2420

Unknown

PER1-LIKE FAMILY PROTEIN
AT1G01910

Predicted

interologs mapping

FSW = 0.1875

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G09580

Predicted

interologs mapping

FSW = 0.1013

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G09460

Predicted

interologs mapping

FSW = 0.1971

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT1G05520

Predicted

synthetic growth defect

FSW = 0.1266

Unknown

TRANSPORT PROTEIN PUTATIVE
AT3G06670

Predicted

two hybrid

FSW = 0.0249

Unknown

BINDING
AT3G12180

Predicted

Phylogenetic profile method

FSW = 0.4954

Unknown

CORNICHON FAMILY PROTEIN
AT4G12090

Predicted

Phylogenetic profile method

FSW = 0.1626

Unknown

CORNICHON FAMILY PROTEIN
AT1G12390

Predicted

Phylogenetic profile method

FSW = 0.1220

Unknown

CORNICHON FAMILY PROTEIN
AT1G62880

Predicted

Phylogenetic profile method

FSW = 0.0330

Unknown

CORNICHON FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454