Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12340 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN intracellular signaling cascade LOCATED IN membrane EXPRESSED IN male gametophyte pollen tube EXPRESSED DURING L mature pollen stage M germinated pollen stage CONTAINS InterPro DOMAIN/s Cornichon (InterProIPR003377) BEST Arabidopsis thaliana protein match is cornichon family protein (TAIRAT1G123901) Has 463 Blast hits to 463 proteins in 125 species Archae - 0 Bacteria - 0 Metazoa - 278 Fungi - 110 Plants - 41 Viruses - 0 Other Eukaryotes - 34 (source NCBI BLink) )
35 Proteins interacs with AT1G12340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G31780 | Predictedinterologs mapping | FSW = 0.1731
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mapping | FSW = 0.2095
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G04910 | Predictedinterologs mapping | FSW = 0.1048
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G30710 | Predictedinterologs mapping | FSW = 0.2344
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G09180 | PredictedReconstituted Complex | FSW = 0.1060
| Unknown | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING |
AT5G23630 | Predictedinterologs mapping | FSW = 0.1712
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | Predictedinterologs mapping | FSW = 0.1589
| Unknown | SEC22 TRANSPORTER |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0647
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT2G17520 | Predictedinterologs mapping | FSW = 0.0735
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0142
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G02410 | Predictedtwo hybrid | FSW = 0.0710
| Unknown | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.1197
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G07290 | Predictedinterologs mapping | FSW = 0.2849
| Unknown | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mapping | FSW = 0.1898
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT2G19720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1355
| Unknown | RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0440
| Unknown | PUX4 PROTEIN BINDING |
AT4G10360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0779
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT5G52210 | Predictedinterologs mapping | FSW = 0.1425
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT3G03180 | Predictedinterologs mapping | FSW = 0.1628
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT2G35210 | Predictedinterologs mapping | FSW = 0.1877
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G34770 | Predictedinterologs mapping | FSW = 0.1394
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G52360 | Predictedinterologs mapping | FSW = 0.2188
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G16560 | Predictedinterologs mapping | FSW = 0.2420
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G01910 | Predictedinterologs mapping | FSW = 0.1875
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G09580 | Predictedinterologs mapping | FSW = 0.1013
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1971
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G05520 | Predictedsynthetic growth defect | FSW = 0.1266
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT3G06670 | Predictedtwo hybrid | FSW = 0.0249
| Unknown | BINDING |
AT3G12180 | PredictedPhylogenetic profile method | FSW = 0.4954
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G12090 | PredictedPhylogenetic profile method | FSW = 0.1626
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G12390 | PredictedPhylogenetic profile method | FSW = 0.1220
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G62880 | PredictedPhylogenetic profile method | FSW = 0.0330
| Unknown | CORNICHON FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454