Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12360 - ( KEU (keule) protein transporter )
46 Proteins interacs with AT1G12360| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G61210
   | Experimentalpull down | FSW = 0.0712
| Class A:plasma membraneClass B:vacuoleplastidcytosolClass D:nucleus (p = 0.78) | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
| AT1G08560
| Experimentalpull downin vitro | FSW = 0.1210
| Class A:plasma membraneClass B:vacuolegolgiendosomecell plateClass D:cytosol (p = 0.67) | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
| AT1G13890
| Experimental | FSW = 0.1000
| Class B:vacuoleplasma membranecytosolClass D:nucleus (p = 0.78) | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) SNAP RECEPTOR |
| AT5G07880
| Experimental | FSW = 0.1569
| Class B:vacuoleplasma membranecytosolClass D:nucleus (p = 0.78) | SNAP29 SNAP RECEPTOR |
| AT2G03160
| Experimental | FSW = 0.0401
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G10230
| Experimental | FSW = 0.0601
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G25650
| Experimental | FSW = 0.0712
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03170
| Experimental | FSW = 0.0663
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G01620
| Experimental | FSW = 0.0480
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
| AT2G33120
| PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0340
| Class C:vacuoleplasma membrane | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
| AT1G02130
| PredictedSynthetic Lethality | FSW = 0.0814
| Class C:vacuoleplasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT4G04910
| PredictedPhenotypic Suppression | FSW = 0.0845
| Class C:vacuole | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G02520
| PredictedDosage Growth Defect | FSW = 0.0616
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0263
| Class C:plasma membrane | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT5G38480
| PredictedDosage Growth Defect | FSW = 0.0864
| Class C:plasma membrane | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G07670
| PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0448
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT4G34580
| PredictedPhenotypic Suppression | FSW = 0.1034
| Class C:plasma membrane | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT5G42740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0627
| Class C:plasma membrane | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
| AT3G03800
| Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.0970
| Class C:plasma membrane | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
| AT5G12370
| PredictedSynthetic LethalityAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.1743
| Class C:plasma membrane | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT4G12120
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1811
| Class C:plasma membrane | SEC1B PROTEIN TRANSPORTER |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0170
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT1G71820
| PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.1953
| Class C:plasma membrane | SEC6 |
| AT3G09900
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1631
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0189
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
| AT4G31720
| PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT5G66020
| PredictedSynthetic Rescue | FSW = 0.0247
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
| AT5G40820
| PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT2G19770
| PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
| AT1G18090
| Predictedtwo hybrid | FSW = 0.0185
| Unknown | EXONUCLEASE PUTATIVE |
| AT1G04160
| PredictedSynthetic Lethality | FSW = 0.0621
| Unknown | XIB (MYOSIN XI B) MOTOR |
| AT1G21170 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappinginterologs mapping | FSW = 0.2620
| Unknown | SEC5B |
| AT3G01340
| PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G56640
| PredictedSynthetic Lethalityinterologs mappinginterologs mappingAffinity Capture-Western | FSW = 0.2834
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT5G13150
| Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.1286
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
| AT1G54390
| PredictedSynthetic Lethality | FSW = 0.0394
| Unknown | PHD FINGER PROTEIN-RELATED |
| AT1G69070
| PredictedSynthetic Lethality | FSW = 0.0107
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G26060
| PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
| AT2G34980
| PredictedSynthetic Lethality | FSW = 0.0240
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
| AT3G25100
| PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
| AT3G56120
| PredictedSynthetic Lethality | FSW = 0.0454
| Unknown | MET-10+ LIKE FAMILY PROTEIN |
| AT5G09550
| PredictedSynthetic Lethality | FSW = 0.1225
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G37340
| PredictedSynthetic Lethality | FSW = 0.0360
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
| AT5G54750
| PredictedSynthetic Lethality | FSW = 0.0756
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
| AT1G29630
| Predictedtwo hybrid | FSW = 0.0064
| Unknown | NUCLEASE |
| AT1G02010
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4776
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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