Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12550 - ( oxidoreductase family protein )
16 Proteins interacs with AT1G12550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G06530 | PredictedGene fusion method | FSW = 0.1793
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT3G12580 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G47470 | PredictedGene fusion method | FSW = 0.0983
| Unknown | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
AT3G04840 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT1G68010 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1636
| Unknown | HPR GLYCERATE DEHYDROGENASE/ POLY(U) BINDING |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | CHC1 |
AT1G27730 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | STZ (SALT TOLERANCE ZINC FINGER) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING |
AT3G02560 | Predictedtwo hybrid | FSW = 0.0272
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT2G47350 | Predictedtwo hybrid | FSW = 0.0495
| Unknown | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0337
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G44720 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | MOLYBDENUM COFACTOR SULFURASE FAMILY PROTEIN |
AT3G10070 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G62700 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT2G45630 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2250
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT1G79870 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3048
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT1G63230 | PredictedGene fusion method | FSW = 0.1325
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454