Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12900 - ( GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )

42 Proteins interacs with AT1G12900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0806

Class C:

plastid

HISTONE H4
AT5G19320

Predicted

Affinity Capture-MS

FSW = 0.0933

Class C:

plastid

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT1G13440

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0980

Class C:

plastid

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G32470

Predicted

Phenotypic Enhancement

FSW = 0.0301

Class C:

plastid

GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0377

Class C:

plastid

WOUND-RESPONSIVE FAMILY PROTEIN
AT3G26650

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1547

Class C:

plastid

GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING
AT3G54670

Predicted

Phenotypic Enhancement

FSW = 0.0283

Class C:

plastid

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT2G40400

Predicted

Affinity Capture-MS

FSW = 0.2515

Class C:

plastid

UNKNOWN PROTEIN
AT4G01100

Predicted

Affinity Capture-MS

FSW = 0.2182

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT3G04120

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0612

Unknown

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2084

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT3G23600

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT1G79530

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.0816

Unknown

GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1224

Unknown

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.0305

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G28860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0420

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G49920

Predicted

Phenotypic Enhancement

FSW = 0.0201

Unknown

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT1G17810

Predicted

Phenotypic Enhancement

FSW = 0.0115

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT1G06830

Predicted

Affinity Capture-MS

FSW = 0.0401

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G25155Predicted

Affinity Capture-MS

FSW = 0.0326

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G34580

Predicted

Phenotypic Enhancement

FSW = 0.0472

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G52500

Predicted

Phenotypic Enhancement

FSW = 0.0106

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G72680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2413

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT2G34180

Predicted

two hybrid

FSW = 0.0392

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G34890

Predicted

Affinity Capture-MS

FSW = 0.1907

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1588

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G28610

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.3772

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G46320Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

FSW = 0.1583

Unknown

HISTONE H4
AT3G50860

Predicted

Synthetic Rescue

FSW = 0.1091

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT5G49560

Predicted

Phenotypic Enhancement

FSW = 0.0119

Unknown

UNKNOWN PROTEIN
ATCG00905Predicted

Phenotypic Enhancement

FSW = 0.0326

Unknown

CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT1G44820

Predicted

Affinity Capture-MS

FSW = 0.0413

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G78960

Predicted

Affinity Capture-MS

FSW = 0.2807

Unknown

ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

XIG MOTOR/ PROTEIN BINDING
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.1094

Unknown

XIF MOTOR
AT3G11230

Predicted

Phenotypic Enhancement

FSW = 0.0234

Unknown

YIPPEE FAMILY PROTEIN
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0337

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G16565

Predicted

Affinity Capture-MS

FSW = 0.0373

Unknown

ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G27440

Predicted

Phenotypic Enhancement

FSW = 0.0298

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT4G00800Predicted

Phenotypic Enhancement

FSW = 0.0408

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G54960

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454