Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12900 - ( GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )
42 Proteins interacs with AT1G12900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0806
| Class C:plastid | HISTONE H4 |
AT5G19320 | PredictedAffinity Capture-MS | FSW = 0.0933
| Class C:plastid | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT1G13440 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0980
| Class C:plastid | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G32470 | PredictedPhenotypic Enhancement | FSW = 0.0301
| Class C:plastid | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0377
| Class C:plastid | WOUND-RESPONSIVE FAMILY PROTEIN |
AT3G26650 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1547
| Class C:plastid | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0283
| Class C:plastid | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT2G40400 | PredictedAffinity Capture-MS | FSW = 0.2515
| Class C:plastid | UNKNOWN PROTEIN |
AT4G01100 | PredictedAffinity Capture-MS | FSW = 0.2182
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT3G04120 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0612
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G16240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2084
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G23600 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT1G79530 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0816
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G16300 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1224
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0305
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0420
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G49920 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.0115
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.0472
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.0106
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2413
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT2G34180 | Predictedtwo hybrid | FSW = 0.0392
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G34890 | PredictedAffinity Capture-MS | FSW = 0.1907
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1588
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28610 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.3772
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G46320 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.1583
| Unknown | HISTONE H4 |
AT3G50860 | PredictedSynthetic Rescue | FSW = 0.1091
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | UNKNOWN PROTEIN |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.0326
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G78960 | PredictedAffinity Capture-MS | FSW = 0.2807
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | XIF MOTOR |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G16565 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.0408
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G54960 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454