Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13060 - ( PBE1 endopeptidase/ peptidase/ threonine-type endopeptidase )
48 Proteins interacs with AT1G13060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G21720 | Predictedtwo hybridCo-purificationCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4398
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4564
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630 | Predictedtwo hybridPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationPhenotypic EnhancementSynthetic Rescue | FSW = 0.3128
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4784
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4386
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0604
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT3G22110 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1912
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4740
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | Predictedtwo hybridAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementSynthetic Rescuesynthetic growth defectCo-purificationinteraction prediction | FSW = 0.2540
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | Predictedtwo hybridCo-purificationCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4345
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4153
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G06380 | PredictedCo-purification | FSW = 0.0376
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0604
| Unknown | PHOSPHOINOSITIDE BINDING |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2197
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G19990 | PredictedCo-purification | FSW = 0.0996
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G47250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4007
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.2073
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3500
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G64230 | PredictedCo-purification | FSW = 0.0713
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G58660 | PredictedCo-purification | FSW = 0.0264
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G19120 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G06210 | Predictedinteraction prediction | FSW = 0.0467
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationtwo hybrid | FSW = 0.4259
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3720
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G04020 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G56450 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.5198
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3006
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G17190 | PredictedSynthetic Rescue | FSW = 0.0452
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G13330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2383
| Unknown | BINDING |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1482
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1921
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G40580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal StructureCo-purificationSynthetic LethalityGene fusion method | FSW = 0.4170
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G49980 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G67500 | PredictedPhenotypic Suppression | FSW = 0.0459
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G02760 | PredictedCo-purification | FSW = 0.0498
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT5G41190 | PredictedCo-purification | FSW = 0.0178
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G41700 | PredictedCo-purification | FSW = 0.0385
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G50870 | PredictedCo-purification | FSW = 0.1138
| Unknown | UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE |
AT3G27430 | PredictedAffinity Capture-MSAffinity Capture-MSCo-crystal StructureCo-purificationSynthetic Lethality | FSW = 0.4734
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G14400 | PredictedCo-purification | FSW = 0.0538
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G64750 | PredictedSynthetic Lethality | FSW = 0.0736
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT4G36630 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT1G74150 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
AT1G07360 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G28088 | Predictedinteraction prediction | FSW = 0.0183
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G54290 | Predictedinteraction prediction | FSW = 0.0288
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G26340 | PredictedPhylogenetic profile method | FSW = 0.1953
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454