Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13120 - ( emb1745 (embryo defective 1745) )

13 Proteins interacs with AT1G13120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G14850

Predicted

two hybrid

Affinity Capture-MS

Reconstituted Complex

FSW = 0.3000

Class C:

plasma membrane

NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0123

Class C:

plasma membrane

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G53110

Predicted

two hybrid

two hybrid

Synthetic Lethality

Reconstituted Complex

interologs mapping

Affinity Capture-Western

biochemical

interaction prediction

FSW = 0.0623

Class C:

plasma membrane

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT5G53480

Predicted

Reconstituted Complex

FSW = 0.0797

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G13430

Predicted

two hybrid

Synthetic Lethality

FSW = 0.1233

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT5G13440

Predicted

interaction prediction

FSW = 0.0896

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT3G06910

Predicted

two hybrid

Affinity Capture-Western

Co-expression

FSW = 0.0756

Unknown

ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0924

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0127

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT5G38890

Predicted

Affinity Capture-MS

FSW = 0.0191

Unknown

EXORIBONUCLEASE-RELATED
AT1G59660Predicted

two hybrid

interaction prediction

FSW = 0.3218

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT1G80670

Predicted

synthetic growth defect

interaction prediction

FSW = 0.3111

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G10390

Predicted

two hybrid

Co-expression

FSW = 0.2483

Unknown

NUCLEOPORIN FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454