Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13320 - ( PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) binding / protein phosphatase type 2A regulator )

80 Proteins interacs with AT1G13320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G18580

Experimental

two hybrid

FSW = 0.0117

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

FASS (FASS 1) PROTEIN PHOSPHATASE TYPE 2B REGULATOR
AT3G07370

Experimental

two hybrid

biochemical

FSW = 0.0159

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.1875

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT5G12010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1029

Class C:

plasma membrane

UNKNOWN PROTEIN
AT5G60390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1610

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G62880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0910

Class C:

plasma membrane

ARAC10 GTP BINDING
AT1G27970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2403

Class C:

plasma membrane

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G13560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1456

Class C:

plasma membrane

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G23900

Predicted

Affinity Capture-MS

FSW = 0.1536

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT3G25800

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0354

Class C:

plasma membrane

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G32670

Predicted

two hybrid

FSW = 0.0195

Class C:

plasma membrane

ATVAMP725
AT1G22300

Predicted

Affinity Capture-MS

FSW = 0.0371

Class C:

plasma membrane

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G25490

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0538

Class C:

plasma membrane

RCN1 (ROOTS CURL IN NPA) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.2106

Class C:

plasma membrane

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.1661

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1856

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT4G36860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2265

Class C:

plasma membrane

ZINC ION BINDING
AT1G10430

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0251

Class C:

plasma membrane

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0058

Class C:

plasma membrane

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT4G02050

Predicted

two hybrid

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0306

Class C:

plasma membrane

SUGAR TRANSPORTER PUTATIVE
AT1G59740

Predicted

Affinity Capture-MS

FSW = 0.0253

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G21680

Predicted

Affinity Capture-MS

FSW = 0.0122

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G12350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1214

Class C:

plasma membrane

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.1919

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G65430

Predicted

Affinity Capture-MS

FSW = 0.0903

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1301

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G51040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1880

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G11630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1397

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.1557

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G02680

Predicted

Affinity Capture-MS

FSW = 0.0462

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0273

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.1436

Unknown

HISTONE H2B PUTATIVE
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.1872

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G31470

Predicted

Affinity Capture-MS

FSW = 0.1644

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.2713

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G41480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2061

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT4G27070

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT4G29430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1794

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27550

Predicted

Affinity Capture-MS

FSW = 0.0415

Unknown

ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.1325

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1402

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G04480Predicted

Affinity Capture-MS

FSW = 0.0814

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.1668

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.1558

Unknown

UNKNOWN PROTEIN
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.1147

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G60730

Predicted

synthetic growth defect

FSW = 0.0128

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G14560

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)
AT2G31020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0760

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G38490

Predicted

Affinity Capture-MS

FSW = 0.0437

Unknown

CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.1523

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G44590

Predicted

Affinity Capture-MS

FSW = 0.0636

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.0804

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G59020

Predicted

Affinity Capture-MS

FSW = 0.0342

Unknown

BINDING / PROTEIN TRANSPORTER
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0920

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G04210

Predicted

Affinity Capture-MS

FSW = 0.0151

Unknown

PUX4 PROTEIN BINDING
AT4G04695

Predicted

Affinity Capture-MS

FSW = 0.0319

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G10130

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G22790

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G01390

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G20560

Predicted

Affinity Capture-MS

FSW = 0.0331

Unknown

BETA-13-GLUCANASE PUTATIVE
AT5G64760

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0709

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.2055

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G63370

Predicted

Affinity Capture-MS

FSW = 0.1289

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.2112

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G16740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1049

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.1812

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G30842

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2383

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0975

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.1807

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.0880

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1668

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1607

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.1886

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G17720

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0219

Unknown

ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G13460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0165

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G08960

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0388

Unknown

PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT5G53000

Predicted

Phenotypic Enhancement

FSW = 0.0690

Unknown

TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454