Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G13320 - ( PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) binding / protein phosphatase type 2A regulator )
80 Proteins interacs with AT1G13320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G18580 | Experimentaltwo hybrid | FSW = 0.0117
| Class D:plastid (p = 0.78)cytosol (p = 0.67) | FASS (FASS 1) PROTEIN PHOSPHATASE TYPE 2B REGULATOR |
AT3G07370 | Experimentaltwo hybridbiochemical | FSW = 0.0159
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1875
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT5G12010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1029
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT5G60390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1610
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G62880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0910
| Class C:plasma membrane | ARAC10 GTP BINDING |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2403
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1456
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.1536
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT3G25800 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0354
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G32670 | Predictedtwo hybrid | FSW = 0.0195
| Class C:plasma membrane | ATVAMP725 |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0371
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G25490 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0538
| Class C:plasma membrane | RCN1 (ROOTS CURL IN NPA) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.2106
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.1661
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1856
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2265
| Class C:plasma membrane | ZINC ION BINDING |
AT1G10430 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0251
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G11420 | PredictedAffinity Capture-MS | FSW = 0.0058
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT4G02050 | Predictedtwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0306
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
AT1G59740 | PredictedAffinity Capture-MS | FSW = 0.0253
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G21680 | PredictedAffinity Capture-MS | FSW = 0.0122
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G12350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1214
| Class C:plasma membrane | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1919
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0903
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1301
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1880
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1397
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.1557
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1436
| Unknown | HISTONE H2B PUTATIVE |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.1872
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G31470 | PredictedAffinity Capture-MS | FSW = 0.1644
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.2713
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G41480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2061
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT4G29430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1794
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G27550 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1402
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G04480 | PredictedAffinity Capture-MS | FSW = 0.0814
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.1668
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1558
| Unknown | UNKNOWN PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.1147
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G60730 | Predictedsynthetic growth defect | FSW = 0.0128
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0760
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G38490 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.1523
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G44590 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.0804
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59020 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0920
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | PUX4 PROTEIN BINDING |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G22790 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G64760 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0709
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2055
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.2112
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1049
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.1812
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2383
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0975
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.1807
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0880
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1668
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1886
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G17720 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0219
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G13460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0165
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G08960 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.0388
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT5G53000 | PredictedPhenotypic Enhancement | FSW = 0.0690
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454