Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13440 - ( GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )
23 Proteins interacs with AT1G13440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01830 | Experimentaltwo hybrid | FSW = 0.0163
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT3G12780 | PredictedAffinity Capture-MS | FSW = 0.1664
| Class C:plastidnucleusmitochondrioncytosol | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT3G26650 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2526
| Class C:plastid | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING |
AT1G22170 | PredictedAffinity Capture-MS | FSW = 0.1116
| Class C:plastid | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT1G12900 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0980
| Class C:plastid | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G04120 | PredictedSynthetic LethalityShared biological functionEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1925
| Class C:plasma membranenucleusmitochondrioncytosol | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G79530 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1709
| Class C:plasma membranecytosol | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G16300 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.4768
| Class C:plasma membranecytosol | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0162
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G53470 | PredictedShared biological functionGene fusion method | FSW = 0.0702
| Class C:plasma membrane | ACBP1 (ACYL-COA BINDING PROTEIN 1) ACYL-COA BINDING / LEAD ION BINDING |
AT4G26720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0363
| Class C:nucleuscytosol | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18270 | PredictedAffinity Capture-MS | FSW = 0.1910
| Class C:nucleus | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
AT1G05120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G06720 | Predictedtwo hybridinteraction prediction | FSW = 0.0174
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G07180 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0309
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G10580 | PredictedPhenotypic Suppression | FSW = 0.0457
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT3G17660 | Predictedtwo hybrid | FSW = 0.0385
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G26020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0256
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G12460 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G51120 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0494
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454