Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13440 - ( GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )

23 Proteins interacs with AT1G13440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01830

Experimental

two hybrid

FSW = 0.0163

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT3G12780

Predicted

Affinity Capture-MS

FSW = 0.1664

Class C:

plastid

nucleus

mitochondrion

cytosol

PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT3G26650

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2526

Class C:

plastid

GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING
AT1G22170

Predicted

Affinity Capture-MS

FSW = 0.1116

Class C:

plastid

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G12900

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0980

Class C:

plastid

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G04120

Predicted

Synthetic Lethality

Shared biological function

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1925

Class C:

plasma membrane

nucleus

mitochondrion

cytosol

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G79530

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1709

Class C:

plasma membrane

cytosol

GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.4768

Class C:

plasma membrane

cytosol

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0162

Class C:

plasma membrane

cytosol

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G53470

Predicted

Shared biological function

Gene fusion method

FSW = 0.0702

Class C:

plasma membrane

ACBP1 (ACYL-COA BINDING PROTEIN 1) ACYL-COA BINDING / LEAD ION BINDING
AT4G26720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0363

Class C:

nucleus

cytosol

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18270

Predicted

Affinity Capture-MS

FSW = 0.1910

Class C:

nucleus

KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN
AT1G05120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0272

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G06720

Predicted

two hybrid

interaction prediction

FSW = 0.0174

Class C:

nucleus

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT3G07180

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

GPI TRANSAMIDASE COMPONENT PIG-S-RELATED
AT4G26840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0309

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G10580

Predicted

Phenotypic Suppression

FSW = 0.0457

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G03820

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT3G17660

Predicted

two hybrid

FSW = 0.0385

Unknown

AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G26020

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0256

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G12460

Predicted

Affinity Capture-MS

FSW = 0.0476

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G51120

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0494

Unknown

PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454