Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13870 - ( DRL1 (DEFORMED ROOTS AND LEAVES 1) calmodulin binding / purine nucleotide binding )

12 Proteins interacs with AT1G13870
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G19980

Predicted

co-fractionation

Co-fractionation

FSW = 0.0349

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G35800

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0645

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G04050

Predicted

two hybrid

FSW = 0.0479

Unknown

PYRUVATE KINASE PUTATIVE
AT5G63680

Predicted

two hybrid

FSW = 0.0375

Unknown

PYRUVATE KINASE PUTATIVE
AT5G67270

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0824

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G54610

Predicted

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.0883

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.0842

Unknown

ATEB1A MICROTUBULE BINDING
AT1G49540

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.1505

Unknown

NUCLEOTIDE BINDING
AT5G09740

Predicted

synthetic growth defect

FSW = 0.0392

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G50320

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1241

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G13680

Predicted

Affinity Capture-Western

FSW = 0.2558

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G50370

Predicted

co-fractionation

Co-fractionation

FSW = 0.0842

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454