Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13950 - ( ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) translation initiation factor )
54 Proteins interacs with AT1G13950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0119
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G15710 | Predictedinterologs mappingAffinity Capture-Westerninterologs mapping | FSW = 0.2525
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT1G16240 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT1G15880 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0388
| Unknown | GOS11 (GOLGI SNARE 11) SNARE BINDING |
AT5G24780 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT4G38350 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | HEDGEHOG RECEPTOR |
AT5G57870 | PredictedSynthetic Lethality | FSW = 0.0097
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT1G11870 | PredictedSynthetic Lethality | FSW = 0.0429
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT2G39290 | PredictedSynthetic Rescue | FSW = 0.0119
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G62880 | PredictedSynthetic Rescue | FSW = 0.0118
| Unknown | ARAC10 GTP BINDING |
AT3G13560 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G26630 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1505
| Unknown | FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR |
AT1G20970 | Predictedinterologs mapping | FSW = 0.0080
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT2G17420 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridSynthetic Lethality | FSW = 0.1619
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
AT5G19310 | Predictedtwo hybrid | FSW = 0.0402
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT5G06260 | Predictedtwo hybridtwo hybrid | FSW = 0.0388
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT1G06960 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G72560 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0641
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G55520 | PredictedSynthetic Lethality | FSW = 0.0025
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G38880 | PredictedSynthetic Lethality | FSW = 0.0525
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT5G17020 | Predictedin vitro | FSW = 0.0183
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT5G47630 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0554
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G30775 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE |
AT5G38710 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE |
AT3G54840 | Predictedsynthetic growth defect | FSW = 0.0410
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G62800 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G14290 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1207
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G47500 | Predictedtwo hybridtwo hybrid | FSW = 0.0100
| Unknown | ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING |
AT4G31290 | Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | CHAC-LIKE FAMILY PROTEIN |
AT5G05920 | Predictedin vitroAffinity Capture-MStwo hybrid | FSW = 0.0623
| Unknown | DHS (DEOXYHYPUSINE SYNTHASE) |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0667
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G77780 | PredictedSynthetic LethalityAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.3297
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G11290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1869
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.1355
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | PredictedSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethality | FSW = 0.0920
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G35520 | Predictedsynthetic growth defect | FSW = 0.1042
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT4G36050 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0472
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38250 | Predictedsynthetic growth defect | FSW = 0.0589
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G04800 | Predictedsynthetic growth defect | FSW = 0.0797
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT1G34340 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0155
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0327
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80530 | Predictedsynthetic growth defect | FSW = 0.0345
| Unknown | NODULIN FAMILY PROTEIN |
AT3G04080 | Predictedsynthetic growth defect | FSW = 0.0097
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT3G24830 | PredictedSynthetic Lethality | FSW = 0.0101
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G59540 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0212
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G00800 | Predictedsynthetic growth defect | FSW = 0.0433
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G40010 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | SNRK27 (SNF1-RELATED PROTEIN KINASE 27) KINASE |
AT5G14850 | PredictedSynthetic Lethality | FSW = 0.0140
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G23580 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G44830 | Predictedsynthetic growth defect | FSW = 0.0535
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G48010 | PredictedSynthetic Lethality | FSW = 0.0265
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G53940 | PredictedSynthetic Lethality | FSW = 0.0387
| Unknown | YIPPEE FAMILY PROTEIN |
AT2G23096 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
AT1G69410 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1085
| Unknown | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454