Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13980 - ( GN (GNOM) GTPGDP antiporter/ protein homodimerization )
17 Proteins interacs with AT1G13980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G29960 | ExperimentalReconstituted Complextwo hybridco-fractionationCo-fractionationtwo hybrid | FSW = 0.0533
| Class A:endoplasmic reticulumClass D:cytosol (p = 0.67) | CYP5 (CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G11260 | Experimentalinteraction detection method | FSW = 0.0471
| Class B:nucleusendoplasmic reticulumClass D:nucleus (p = 0.78) | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT4G18960 | Experimental | FSW = 0.0242
| Class B:nucleusendoplasmic reticulumClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G01830 | Experimentaltwo hybrid | FSW = 0.0099
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT1G02130 | Predictedinterologs mapping | FSW = 0.0154
| Class C:endoplasmic reticulum | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT5G23670 | Predictedinteraction prediction | FSW = 0.0909
| Class C:endoplasmic reticulum | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G29330 | Predictedinterologs mapping | FSW = 0.0105
| Class C:endoplasmic reticulum | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G03860 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | ATPHB2 (PROHIBITIN 2) |
AT1G18190 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | GC2 (GOLGIN CANDIDATE 2) |
AT1G13210 | Predictedinterologs mappingAffinity Capture-Westernsynthetic growth defecttwo hybrid | FSW = 0.0163
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT2G19760 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT2G15240 | PredictedAffinity Capture-Western | FSW = 0.0421
| Unknown | UNC-50 FAMILY PROTEIN |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT3G56340 | Predictedtwo hybrid | FSW = 0.0463
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT3G48780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0710
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT4G34450 | Predictedinterologs mapping | FSW = 0.0594
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT2G34770 | Predictedinterologs mapping | FSW = 0.0323
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454