Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G14010 - ( emp24/gp25L/p24 family protein )

56 Proteins interacs with AT1G14010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07680

Predicted

two hybrid

FSW = 0.0210

Class C:

vacuole

golgi

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G01280

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.4234

Class C:

vacuole

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT1G58030

Predicted

two hybrid

FSW = 0.0261

Class C:

vacuole

CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER
AT2G17520

Predicted

interologs mapping

FSW = 0.0172

Class C:

endoplasmic reticulum

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G69460

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.2073

Class C:

endoplasmic reticulum

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G05710

Predicted

interologs mapping

FSW = 0.0074

Class C:

endoplasmic reticulum

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G38960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2989

Class C:

endoplasmic reticulum

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G09820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5133

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.1032

Unknown

HTB1 DNA BINDING
AT1G16880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2385

Unknown

URIDYLYLTRANSFERASE-RELATED
AT5G49030

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1244

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G18870

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4006

Unknown

ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT4G08690

Predicted

Affinity Capture-MS

FSW = 0.5341

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G45380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6273

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2747

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.3111

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G25800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1761

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G14340

Predicted

Affinity Capture-MS

FSW = 0.4012

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6197

Unknown

UNKNOWN PROTEIN
AT1G30810

Predicted

Affinity Capture-MS

FSW = 0.6309

Unknown

TRANSCRIPTION FACTOR
AT1G13560

Predicted

two hybrid

FSW = 0.0879

Unknown

AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G08980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6686

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G55605

Predicted

Affinity Capture-MS

FSW = 0.1926

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.1229

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G10350

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3674

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G02730

Predicted

Affinity Capture-MS

FSW = 0.2367

Unknown

ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE
AT1G06790

Predicted

Affinity Capture-MS

FSW = 0.4033

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G10940

Predicted

Affinity Capture-MS

FSW = 0.2750

Unknown

SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT1G27040

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G27080

Predicted

Affinity Capture-MS

FSW = 0.1855

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT2G04660

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G20410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5656

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G29680

Predicted

Affinity Capture-MS

FSW = 0.3674

Unknown

CDC6 (CELL DIVISION CONTROL 6)
AT2G29940

Predicted

Affinity Capture-MS

FSW = 0.6056

Unknown

PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G31060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4821

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT3G05760

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4764

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G52590Predicted

Affinity Capture-MS

FSW = 0.3326

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4626

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G54630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2604

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT4G00810

Predicted

Affinity Capture-MS

FSW = 0.2827

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT4G28470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1231

Unknown

RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR
AT4G31770

Predicted

Affinity Capture-MS

FSW = 0.4006

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G31985

Predicted

Affinity Capture-MS

FSW = 0.2922

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G16960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5824

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3878

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT1G74250

Predicted

Affinity Capture-MS

FSW = 0.3833

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G01070

Predicted

interologs mapping

FSW = 0.0108

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.3426

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT1G09580

Predicted

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

FSW = 0.1244

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G06460

Predicted

two hybrid

FSW = 0.0194

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G24470

Predicted

two hybrid

FSW = 0.0194

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G57620

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.0805

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G26690

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1127

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G21900

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1712

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G10780

Predicted

Phylogenetic profile method

FSW = 0.1790

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G29070

Predicted

Phylogenetic profile method

FSW = 0.1231

Unknown

PROTEIN TRANSMEMBRANE TRANSPORTER

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454