Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14290 - ( SBH2 (SPHINGOID BASE HYDROXYLASE 2) catalytic/ sphingosine hydroxylase )
25 Proteins interacs with AT1G14290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Rescue | FSW = 0.0270
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G66680 | Predictedtwo hybrid | FSW = 0.1766
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT4G19640 | Predictedinterologs mapping | FSW = 0.0367
| Unknown | ARA7 GTP BINDING |
AT1G31780 | Predictedinterologs mapping | FSW = 0.1090
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G13710 | Predictedinterologs mapping | FSW = 0.0907
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G08560 | Predictedinterologs mapping | FSW = 0.1552
| Unknown | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT5G23630 | Predictedinterologs mapping | FSW = 0.1189
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G51460 | Predictedinterologs mapping | FSW = 0.1345
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT2G17520 | Predictedinterologs mapping | FSW = 0.0776
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0935
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G27980 | Predictedinterologs mapping | FSW = 0.1957
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT2G44660 | Predictedinterologs mappingCo-expression | FSW = 0.1216
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G47290 | Predictedinterologs mapping | FSW = 0.0690
| Unknown | AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT4G21540 | Predictedinterologs mapping | FSW = 0.1800
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT3G58490 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1980
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT2G34770 | Predictedinterologs mappingCo-expression | FSW = 0.0974
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G13580 | Predictedinterologs mapping | FSW = 0.0622
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT2G34980 | Predictedtwo hybrid | FSW = 0.1742
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G22425 | Predictedtwo hybrid | FSW = 0.1569
| Unknown | PEPTIDASE |
AT3G60800 | Predictedtwo hybrid | FSW = 0.1545
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT2G18770 | Predictedtwo hybrid | FSW = 0.2582
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT3G06460 | Predictedtwo hybrid | FSW = 0.1684
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1852
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G08750 | Predictedtwo hybrid | FSW = 0.2441
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G69640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6011
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454