Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14310 - ( haloacid dehalogenase-like hydrolase family protein )

29 Proteins interacs with AT1G14310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0539

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.1291

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G26590

Predicted

biochemical

FSW = 0.0323

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1736

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT5G65430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0855

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G44610

Predicted

Affinity Capture-MS

FSW = 0.0726

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G80030

Predicted

Affinity Capture-MS

FSW = 0.0929

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G47370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.1690

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G28950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.3176

Unknown

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G63110

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.1557

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT4G09800Predicted

Affinity Capture-MS

FSW = 0.0091

Unknown

RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT2G23460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.2632

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT5G20160

Predicted

Affinity Capture-MS

FSW = 0.0217

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G41480

Predicted

co-fractionation

Co-fractionation

FSW = 0.1344

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G12530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1978

Unknown

PSF2
AT4G24710

Predicted

two hybrid

FSW = 0.0147

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G05785

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.4169

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G05910

Predicted

Affinity Capture-MS

FSW = 0.1093

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G33770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1892

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.2678

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.1999

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.2647

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G55730

Predicted

co-fractionation

Co-fractionation

FSW = 0.2420

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT2G31260

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0121

Unknown

APG9 (AUTOPHAGY 9)
AT3G23570

Predicted

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.1639

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G47940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.1932

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G50880

Predicted

Affinity Capture-MS

FSW = 0.1504

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454