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AT1G14560 - ( mitochondrial substrate carrier family protein )

11 Proteins interacs with AT1G14560

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G01100	Predicted Phylogenetic profile method Co-expression	FSW = 0.3277	Class C: mitochondrion	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT3G55640	Predicted Phylogenetic profile method Co-expression	FSW = 0.8021	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G61810	Predicted Phylogenetic profile method Co-expression	FSW = 0.6001	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G26180	Predicted Phylogenetic profile method Co-expression	FSW = 0.6325	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G20240	Predicted Phylogenetic profile method Co-expression	FSW = 0.5316	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G21390	Predicted Phylogenetic profile method	FSW = 0.5988	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G53940	Predicted Phylogenetic profile method Co-expression	FSW = 0.5988	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890	Predicted Phylogenetic profile method Co-expression	FSW = 0.5240	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G30160	Predicted Gene fusion method Co-expression	FSW = 0.0204	Class C: mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G39970	Predicted Gene fusion method Co-expression	FSW = 0.3004	Unknown	PEROXISOMAL MEMBRANE PROTEIN (PMP36)
AT5G66240	Predicted Gene fusion method	FSW = 0.1426	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT1G14560 - ( mitochondrial substrate carrier family protein )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite