Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14810 - ( semialdehyde dehydrogenase family protein )
13 Proteins interacs with AT1G14810| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G14660
   | Predictedpull down | FSW = 0.0462
| Class C:plastidmitochondrion | PDF1B (PEPTIDE DEFORMYLASE 1B) IRON ION BINDING / PEPTIDE DEFORMYLASE |
| AT1G56190
| Predictedblue native page | FSW = 0.0623
| Class C:plastidmitochondrion | PHOSPHOGLYCERATE KINASE PUTATIVE |
| AT3G27850
| Predictedpull down | FSW = 0.1120
| Class C:plastid | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G31230
| PredictedSynthetic RescueGene neighbors methodCo-expression | FSW = 0.1324
| Class C:plastid | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) ASPARTATE KINASE/ HOMOSERINE DEHYDROGENASE |
| ATCG00180 | Predictedpull down | FSW = 0.1143
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
| ATCG00190 | Predictedpull down | FSW = 0.2375
| Class C:plastid | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
| ATCG00740 | Predictedpull down | FSW = 0.1761
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00800 | Predictedpull down | FSW = 0.1108
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| AT4G02930
| Predictedpull down | FSW = 0.0434
| Class C:mitochondrion | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
| AT3G09210
| Predictedpull down | FSW = 0.2523
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT3G25230
| PredictedSynthetic Rescue | FSW = 0.0415
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT4G03430
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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