Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14850 - ( NUP155 nucleocytoplasmic transporter )
17 Proteins interacs with AT1G14850| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G63130
   | Predictedinterologs mapping | FSW = 0.0418
| Class C:plastidplasma membranenucleus | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
| AT4G24750
| Predictedtwo hybridAffinity Capture-MSReconstituted Complex | FSW = 0.0356
| Class C:plastid | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RHODANESE-LIKE (INTERPROIPR001763) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN (TAIRAT3G089201) HAS 222 BLAST HITS TO 222 PROTEINS IN 59 SPECIES ARCHAE - 8 BACTERIA - 82 METAZOA - 0 FUNGI - 0 PLANTS - 88 VIRUSES - 0 OTHER EUKARYOTES - 44 (SOURCE NCBI BLINK) |
| AT5G53480
| PredictedSynthetic Lethality | FSW = 0.0816
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
| AT1G31812
| PredictedAffinity Capture-MS | FSW = 0.0443
| Class C:plasma membrane | ACBP6 (ACYL-COA-BINDING PROTEIN 6) ACYL-COA BINDING / PHOSPHATIDYLCHOLINE BINDING |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0041
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G25754 | Predictedtwo hybridtwo hybrid | FSW = 0.0250
| Class C:plasma membrane | UNKNOWN PROTEIN |
| AT1G63110
| PredictedAffinity Capture-MS | FSW = 0.0178
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT1G13120
| Predictedtwo hybridAffinity Capture-MSReconstituted Complex | FSW = 0.3000
| Class C:plasma membrane | EMB1745 (EMBRYO DEFECTIVE 1745) |
| AT1G27310
| Predictedinterologs mapping | FSW = 0.0779
| Class C:nucleus | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0123
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0023
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G10930
| Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0073
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G59660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2703
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
| AT3G54380
| PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | SAC3/GANP FAMILY PROTEIN |
| AT5G42190
| Predictedtwo hybrid | FSW = 0.0157
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G10390
| PredictedAffinity Capture-MS | FSW = 0.1553
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
| AT3G06000
| Predictedinterologs mapping | FSW = 0.0902
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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