Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G15200 - ( protein-protein interaction regulator family protein )

17 Proteins interacs with AT1G15200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G18165

Experimental

FSW = 0.0536

Unknown

MOS4 (MODIFIER OF SNC14)
AT4G10760

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0800

Unknown

MTA (MRNA ADENOSINE METHYLASE) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE
AT5G16130

Predicted

two hybrid

FSW = 0.0952

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7C)
AT1G16610

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0559

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT4G32420

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

FSW = 0.1008

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G02560

Predicted

two hybrid

two hybrid

FSW = 0.0536

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT1G03910

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.1318

Unknown

EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK)
AT1G18090

Predicted

two hybrid

FSW = 0.0211

Unknown

EXONUCLEASE PUTATIVE
AT1G29630

Predicted

two hybrid

two hybrid

FSW = 0.0157

Unknown

NUCLEASE
AT3G17920

Predicted

two hybrid

FSW = 0.0381

Unknown

PROTEIN BINDING
AT3G27530

Predicted

two hybrid

two hybrid

FSW = 0.0229

Unknown

GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT5G41770

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0350

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G42620

Predicted

two hybrid

FSW = 0.0500

Unknown

METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT5G59410

Predicted

two hybrid

two hybrid

FSW = 0.0400

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G01510

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0267

Unknown

AN (ANGUSTIFOLIA) PROTEIN BINDING
AT2G15790

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0157

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G70620

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0356

Unknown

CYCLIN-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454