Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G15870 - ( mitochondrial glycoprotein family protein / MAM33 family protein )
26 Proteins interacs with AT1G15870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G55605 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0500
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT2G39790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2000
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0762
| Class C:mitochondrion | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | HISTONE H4 |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G74970 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1634
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G44050 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE |
AT3G14130 | PredictedProtein-peptide | FSW = 0.0315
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G17590 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT2G18760 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0082
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G14800 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT3G16700 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G22400 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0462
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0267
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G64600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1455
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT1G15810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1645
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT1G09200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0356
| Unknown | HISTONE H3 |
AT5G14520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0295
| Unknown | PESCADILLO-RELATED |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G66740 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0174
| Unknown | SGA2 |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454