Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G15920 - ( CCR4-NOT transcription complex protein putative )

89 Proteins interacs with AT1G15920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0217

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G07698

Predicted

synthetic growth defect

FSW = 0.0500

Unknown

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT2G01690

Predicted

synthetic growth defect

FSW = 0.0159

Unknown

BINDING
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0231

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G06530

Predicted

synthetic growth defect

FSW = 0.0674

Unknown

VPS21
AT3G02660

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE
AT1G18440

Predicted

synthetic growth defect

FSW = 0.0215

Unknown

PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT5G09260

Predicted

Synthetic Lethality

FSW = 0.2217

Unknown

VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202)
AT3G51460

Predicted

Synthetic Lethality

FSW = 0.0690

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT4G16830

Predicted

interologs mapping

interologs mapping

interologs mapping

FSW = 0.0319

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G05190

Predicted

Synthetic Lethality

FSW = 0.0826

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT3G12810

Predicted

synthetic growth defect

FSW = 0.0960

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530

Predicted

synthetic growth defect

FSW = 0.1242

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G43810

Predicted

Synthetic Lethality

FSW = 0.1074

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590

Predicted

Synthetic Lethality

FSW = 0.0352

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G19120

Predicted

Synthetic Lethality

FSW = 0.1485

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Synthetic Lethality

FSW = 0.1300

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G63210

Predicted

Synthetic Rescue

FSW = 0.0262

Unknown

RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT1G06960

Predicted

Synthetic Lethality

FSW = 0.0295

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT4G38130

Predicted

Synthetic Lethality

FSW = 0.0554

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G07370

Predicted

Phenotypic Enhancement

Reconstituted Complex

FSW = 0.1160

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G27470

Predicted

Reconstituted Complex

FSW = 0.0294

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT3G19210

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2459

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G55520

Predicted

Synthetic Rescue

Co-expression

FSW = 0.0174

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G43700

Predicted

two hybrid

FSW = 0.0184

Unknown

VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G05780

Predicted

Synthetic Lethality

FSW = 0.0592

Unknown

LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G35940Predicted

synthetic growth defect

FSW = 0.1885

Unknown

LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G50500

Predicted

Synthetic Lethality

FSW = 0.0714

Unknown

HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT1G67630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0674

Unknown

POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G71270

Predicted

Synthetic Lethality

FSW = 0.0384

Unknown

POK (POKY POLLEN TUBE)
AT3G47690

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.2245

Unknown

ATEB1A MICROTUBULE BINDING
AT2G31970

Predicted

Synthetic Lethality

FSW = 0.2107

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G54260

Predicted

Synthetic Lethality

FSW = 0.2098

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200

Predicted

Synthetic Lethality

FSW = 0.1045

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G77140

Predicted

synthetic growth defect

FSW = 0.0816

Unknown

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT3G20050

Predicted

Affinity Capture-MS

FSW = 0.0067

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G20850

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1540

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G54860

Predicted

Synthetic Lethality

FSW = 0.1313

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT3G58560

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

interologs mapping

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Co-purification

interologs mapping

two hybrid

FSW = 0.6124

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G33040

Predicted

Affinity Capture-MS

FSW = 0.0034

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT3G20800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0655

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT1G02080Predicted

two hybrid

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Synthetic Lethality

Synthetic Rescue

FSW = 0.1197

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT5G67100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0899

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT5G41880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0942

Unknown

POLA3 DNA PRIMASE
AT1G67320

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0901

Unknown

DNA PRIMASE LARGE SUBUNIT FAMILY
AT1G07705

Predicted

two hybrid

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1492

Unknown

TRANSCRIPTION REGULATOR
AT3G45630

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0733

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G18230

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1020

Unknown

TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT5G35980

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0449

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G19050

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0228

Unknown

ATP BINDING / PROTEIN BINDING
AT2G45810

Predicted

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Synthetic Lethality

two hybrid

FSW = 0.0861

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.2223

Unknown

ENDONUCLEASE PUTATIVE
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1017

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G25120Predicted

synthetic growth defect

FSW = 0.1812

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G42660

Predicted

synthetic growth defect

FSW = 0.2549

Unknown

NUCLEOTIDE BINDING
AT3G07120

Predicted

synthetic growth defect

FSW = 0.2508

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2529

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G55255Predicted

synthetic growth defect

FSW = 0.2308

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G66740

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1950

Unknown

SGA2
AT2G34050

Predicted

synthetic growth defect

FSW = 0.0580

Unknown

INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G04730Predicted

synthetic growth defect

FSW = 0.2549

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G54370

Predicted

synthetic growth defect

FSW = 0.0577

Unknown

NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT5G40490

Predicted

synthetic growth defect

FSW = 0.1566

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23420

Predicted

synthetic growth defect

FSW = 0.2037

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G10930

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1635

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G35890

Predicted

synthetic growth defect

FSW = 0.0176

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT3G12400

Predicted

synthetic growth defect

FSW = 0.1714

Unknown

ELC UBIQUITIN BINDING
AT3G45000

Predicted

synthetic growth defect

FSW = 0.0799

Unknown

VPS242
AT3G61710

Predicted

synthetic growth defect

FSW = 0.0378

Unknown

AUTOPHAGY PROTEIN APG6 FAMILY
AT2G27600

Predicted

synthetic growth defect

FSW = 0.0404

Unknown

SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G18000

Predicted

synthetic growth defect

FSW = 0.1558

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT3G03420

Predicted

synthetic growth defect

FSW = 0.0390

Unknown

KU70-BINDING FAMILY PROTEIN
AT5G13780

Predicted

Synthetic Lethality

FSW = 0.2279

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

Synthetic Lethality

FSW = 0.2088

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1394

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT2G37550

Predicted

Synthetic Lethality

FSW = 0.0242

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G69680

Predicted

Synthetic Lethality

FSW = 0.0340

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT5G27970Predicted

Synthetic Lethality

FSW = 0.1119

Unknown

BINDING
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.2156

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.1313

Unknown

SNL6 (SIN3-LIKE 6)
AT4G27040

Predicted

Synthetic Lethality

FSW = 0.1492

Unknown

VPS22
AT5G04920

Predicted

Synthetic Lethality

FSW = 0.1875

Unknown

VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN
AT1G80780

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2084

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G44260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1537

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G32070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3312

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G44240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1633

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G22250

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1633

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G10960

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6000

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G61470

Predicted

Phylogenetic profile method

FSW = 0.1537

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454