Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16240 - ( SYP51 (SYNTAXIN OF PLANTS 51) SNAP receptor )
51 Proteins interacs with AT1G16240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39510 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0566
| Class A:vacuoleClass B:nucleusgolgiendoplasmic reticulumClass D:nucleus (p = 0.78)golgi (p = 0.04) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G16830 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0797
| Class A:vacuoleClass B:nucleusendoplasmic reticulumClass D:plastid (p = 0.78)nucleus (p = 0.78)golgi (p = 0.04) | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
AT5G46860 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0707
| Class A:vacuoleClass B:nucleusendoplasmic reticulumClass D:nucleus (p = 0.78) | VAM3 SNAP RECEPTOR |
AT1G28490 | Experimentalsplit-reporter assayAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0552
| Class B:vacuolenucleusgolgiendoplasmic reticulumClass D:golgi (p = 0.04) | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT3G09440 | PredictedPhenotypic Suppression | FSW = 0.0373
| Class C:vacuolenucleus | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT4G01100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2634
| Class C:vacuole | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1361
| Class C:vacuole | HISTONE H4 |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0293
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0232
| Class C:nucleus | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G29960 | PredictedColocalization | FSW = 0.0262
| Class C:nucleus | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G27670 | PredictedAffinity Capture-WesternAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternCo-crystal Structure | FSW = 0.1079
| Class C:nucleus | HTA7 (HISTONE H2A 7) DNA BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0350
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G28740 | PredictedAffinity Capture-MS | FSW = 0.3124
| Class C:nucleus | HIS4 DNA BINDING |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0908
| Class C:nucleus | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT2G40400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2687
| Unknown | UNKNOWN PROTEIN |
AT1G56050 | PredictedPhenotypic Enhancement | FSW = 0.0528
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G12900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2084
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2231
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G47510 | PredictedAffinity Capture-Western | FSW = 0.0450
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0292
| Unknown | ATVAMP725 |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G33730 | Predictedbiochemical | FSW = 0.0353
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0653
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.0143
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.0374
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G20050 | Predictedtwo hybridtwo hybridSynthetic Lethality | FSW = 0.0407
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G02100 | PredictedPhenotypic Suppression | FSW = 0.0645
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0217
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G34580 | PredictedProtein-peptideAffinity Capture-WesternCo-crystal StructurePhenotypic Enhancement | FSW = 0.0776
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G70290 | Predictedbiochemical | FSW = 0.0251
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3280
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT1G78960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2687
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G03250 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1255
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3161
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1906
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3951
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G45590 | PredictedPhenotypic Enhancement | FSW = 0.0548
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1833
| Unknown | HISTONE H4 |
AT3G47120 | PredictedAffinity Capture-Western | FSW = 0.0054
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G50780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0738
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G50860 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1568
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G57140 | Predictedbiochemical | FSW = 0.0373
| Unknown | PATATIN-RELATED |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1214
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G53940 | PredictedSynthetic Rescue | FSW = 0.0408
| Unknown | YIPPEE FAMILY PROTEIN |
AT1G19750 | PredictedPhenotypic Enhancement | FSW = 0.0418
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G15460 | PredictedReconstituted Complex | FSW = 0.0327
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.1397
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT1G16230 | PredictedPhylogenetic profile method | FSW = 0.0385
| Unknown | SYNTAXIN-RELATED FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454