Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G16360 - ( LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein )

24 Proteins interacs with AT1G16360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT4G21980

Predicted

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.0234

Unknown

APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT5G06290

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0619

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.0439

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT1G10070

Predicted

Affinity Capture-Western

Phenotypic Enhancement

biochemical

FSW = 0.0161

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G53480

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.0155

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G79450

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1222

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT4G22120

Predicted

two hybrid

FSW = 0.0266

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G12110

Predicted

Affinity Capture-MS

FSW = 0.0321

Unknown

NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT3G57300

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0107

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G02580

Predicted

Synthetic Lethality

FSW = 0.0525

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT1G52300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.0825

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT4G39100

Predicted

biochemical

FSW = 0.0156

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT1G07880

Predicted

Affinity Capture-Western

FSW = 0.0214

Unknown

ATMPK13 MAP KINASE/ KINASE
AT1G10210

Predicted

biochemical

FSW = 0.0323

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G27040

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

NITRATE TRANSPORTER PUTATIVE
AT2G20000

Predicted

Affinity Capture-MS

Synthetic Rescue

FSW = 0.0416

Unknown

HBT (HOBBIT) BINDING
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT1G02080Predicted

interologs mapping

FSW = 0.0247

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT4G34490

Predicted

Synthetic Lethality

FSW = 0.0347

Unknown

ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT5G46150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0814

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G54320

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1852

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT3G12740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3232

Unknown

ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454