Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16360 - ( LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein )
24 Proteins interacs with AT1G16360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G21980 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0234
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G06290 | PredictedSynthetic RescueSynthetic RescuePhenotypic Suppression | FSW = 0.0619
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G10070 | PredictedAffinity Capture-WesternPhenotypic Enhancementbiochemical | FSW = 0.0161
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G53480 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.0155
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G79450 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1222
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0266
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G12110 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT3G57300 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0107
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT3G02580 | PredictedSynthetic Lethality | FSW = 0.0525
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G52300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0825
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39100 | Predictedbiochemical | FSW = 0.0156
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G07880 | PredictedAffinity Capture-Western | FSW = 0.0214
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G10210 | Predictedbiochemical | FSW = 0.0323
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G27040 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT2G20000 | PredictedAffinity Capture-MSSynthetic Rescue | FSW = 0.0416
| Unknown | HBT (HOBBIT) BINDING |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT1G02080 | Predictedinterologs mapping | FSW = 0.0247
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT4G34490 | PredictedSynthetic Lethality | FSW = 0.0347
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT5G46150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0814
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G54320 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1852
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT3G12740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3232
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454