Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16560 - ( Per1-like family protein )
43 Proteins interacs with AT1G16560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.2188
| Unknown | CALNEXIN 1 (CNX1) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0793
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G07680 | Predictedinterologs mapping | FSW = 0.0156
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G01320 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1774
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G22845 | PredictedPhenotypic Enhancement | FSW = 0.0213
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT2G30710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2841
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G63840 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3484
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G09210 | Predictedinterologs mapping | FSW = 0.2554
| Unknown | CALRETICULIN 2 (CRT2) |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3260
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1993
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0341
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1625
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0912
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G71270 | Predictedtwo hybrid | FSW = 0.2246
| Unknown | POK (POKY POLLEN TUBE) |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1771
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G67490 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.3004
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT2G39630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2878
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G22200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0960
| Unknown | UNKNOWN PROTEIN |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2551
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G38460 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3297
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G44660 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.2392
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.1275
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0518
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.3049
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G53710 | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0430
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G57600 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.4390
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.3623
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2816
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0394
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0451
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT3G62930 | Predictedinterologs mapping | FSW = 0.0219
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G27970 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1492
| Unknown | BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0271
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.0926
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G34770 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.2010
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G52360 | Predictedinterologs mapping | FSW = 0.0600
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G24320 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.2514
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT1G09460 | Predictedinterologs mapping | FSW = 0.2787
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G12340 | Predictedinterologs mapping | FSW = 0.2420
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT5G62130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0696
| Unknown | PER1-LIKE PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454