Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16570 - ( glycosyl transferase family 1 protein )
27 Proteins interacs with AT1G16570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybridinteraction prediction | FSW = 0.0411
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT2G38940 | Predictedinteraction prediction | FSW = 0.0611
| Unknown | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.1307
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G55360 | Predictedtwo hybridinteraction prediction | FSW = 0.2361
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT3G54700 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G32090 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G67730 | Predictedtwo hybrid | FSW = 0.3078
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT3G07790 | Predictedtwo hybridtwo hybrid | FSW = 0.0178
| Unknown | DGCR14-RELATED |
AT5G55130 | Predictedtwo hybridtwo hybrid | FSW = 0.0140
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.1548
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.1443
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT4G32530 | Predictedtwo hybridinteraction prediction | FSW = 0.1210
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G39830 | Predictedtwo hybridinteraction prediction | FSW = 0.1059
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT1G78800 | PredictedAffinity Capture-Western | FSW = 0.0595
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT2G39770 | Predictedinterologs mappinginterologs mappinginterologs mappinginteraction prediction | FSW = 0.0124
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G40190 | PredictedAffinity Capture-Western | FSW = 0.2118
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT2G41880 | PredictedPhenotypic Enhancement | FSW = 0.0334
| Unknown | GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.2029
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT5G17860 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT2G25610 | Predictedtwo hybrid | FSW = 0.1694
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT2G22425 | Predictedtwo hybrid | FSW = 0.1191
| Unknown | PEPTIDASE |
AT1G31820 | Predictedtwo hybridinteraction prediction | FSW = 0.1109
| Unknown | AMINO ACID PERMEASE FAMILY PROTEIN |
AT1G20860 | Predictedtwo hybrid | FSW = 0.0870
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
AT1G54115 | Predictedtwo hybrid | FSW = 0.0945
| Unknown | CCX4 (CATION CALCIUM EXCHANGER 4) CATIONCATION ANTIPORTER |
AT1G24470 | Predictedtwo hybrid | FSW = 0.3834
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G10090 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | UNKNOWN PROTEIN |
AT4G40042 | Predictedinteraction prediction | FSW = 0.1377
| Unknown | PEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454